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trinityrnaseq

RNA-Seq De novo Assembly

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general
  • source: trinityrnaseq (main)
  • version: 2.13.2+dfsg-3
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Michael R. Crusoe [DMD]
  • arch: all any
  • std-ver: 4.6.0
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 2.2.0+dfsg-2
  • oldstable: 2.6.6+dfsg-6
  • stable: 2.11.0+dfsg-6
  • unstable: 2.13.2+dfsg-3
versioned links
  • 2.2.0+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.6.6+dfsg-6: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.11.0+dfsg-6: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.13.2+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • trinityrnaseq
  • trinityrnaseq-examples
action needed
Debci reports failed tests high
  • unstable: fail (log)
    The tests ran in 0:35:51
    Last run: 2023-03-18T19:03:06.000Z
    Previous status: fail

  • testing: fail (log)
    The tests ran in 0:00:12
    Last run: 2022-11-14T12:10:31.000Z
    Previous status: fail

  • stable: pass (log)
    The tests ran in 0:24:50
    Last run: 2023-03-21T21:43:23.000Z
    Previous status: pass

Created: 2022-01-04 Last update: 2023-04-02 00:09
Problems while searching for a new upstream version high
uscan had problems while searching for a new upstream version:
In debian/watch no matching files for watch line
  https://github.com/trinityrnaseq/trinityrnaseq/releases .*v(?:[-_]?(\d[\-+\.:\~\da-zA-Z]*))(?:\.wExtSampleData|\.FULL_with_extendedTestData)(?i)(?:\.(?:tar\.xz|tar\.bz2|tar\.gz|tar\.zstd?|zip|tgz|tbz|txz))
Created: 2022-09-16 Last update: 2023-04-01 19:35
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 20-day delay is over. Check why.
Created: 2022-04-04 Last update: 2023-04-02 00:01
version in VCS is newer than in repository, is it time to upload? normal
vcswatch reports that this package seems to have a new changelog entry (version 2.15.0+dfsg-1, distribution UNRELEASED) and new commits in its VCS. You should consider whether it's time to make an upload.

Here are the relevant commit messages:
commit 94bbafebee1cbd078a73f46717c5308d82a4f06b
Author: Andreas Tille <tille@debian.org>
Date:   Thu Mar 2 08:34:50 2023 +0100

    Add TODO

commit 964f94355759a5a2d39089190517506b47315003
Merge: 6261284 1db989c
Author: Andreas Tille <tille@debian.org>
Date:   Thu Mar 2 08:25:00 2023 +0100

    Update upstream source from tag 'upstream/2.15.1+dfsg'
    
    Update to upstream version '2.15.1+dfsg'
    with Debian dir c0ee39c54085d0b8fbd957fd5d1abadf6791728b

commit 1db989c5146e836e99f09962924d7bfe4b3cb2c0
Author: Andreas Tille <tille@debian.org>
Date:   Thu Mar 2 08:21:31 2023 +0100

    New upstream version 2.15.1+dfsg

commit 62612843604d3e647193b85efa64453a16fd79b3
Author: Andreas Tille <tille@debian.org>
Date:   Sat Jan 21 12:15:30 2023 +0100

    Refresh patches

commit 832df6ad6d03224a0dfa7a123096123054cbaa9b
Author: Andreas Tille <tille@debian.org>
Date:   Sat Jan 21 12:07:35 2023 +0100

    routine-update: Standards-Version: 4.6.2

commit a0b93e5733d62a94e661bc5b2c59a819579dc95b
Merge: db7490b 8f06239
Author: Andreas Tille <tille@debian.org>
Date:   Sat Jan 21 12:07:35 2023 +0100

    Update upstream source from tag 'upstream/2.15.0+dfsg'
    
    Update to upstream version '2.15.0+dfsg'
    with Debian dir a358fb171c02bdafc85e07e0bf202b62578e84da

commit 8f062390ba66b192c30c5968d1cbbbe34d5d3adb
Author: Andreas Tille <tille@debian.org>
Date:   Sat Jan 21 12:04:55 2023 +0100

    New upstream version 2.15.0+dfsg

commit db7490b71cf2701bfd9944ee4a69572b5f1126d7
Author: Andreas Tille <tille@debian.org>
Date:   Sat Jan 21 12:04:50 2023 +0100

    routine-update: New upstream version

commit bfa66f4a3c87bc9a427d2d29658ac0175ce146ef
Author: Michael R. Crusoe <crusoe@debian.org>
Date:   Sat Jan 21 11:39:48 2023 +0100

    d/watch: update for GitHub API breakage

commit 556d5958b51bacb9eb86490257ecbf635c03747b
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Apr 10 18:07:36 2022 +0200

    routine-update: Ready to upload to unstable

commit 02ba8e4dd52429eb41e5965bda451df6828a489b
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Apr 10 18:06:20 2022 +0200

    Refresh patches

commit 9b0389d980aa0e9612c993eb69d1a56e8c7bfe17
Merge: ac485f3 9773f0b
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Apr 10 18:02:57 2022 +0200

    Update upstream source from tag 'upstream/2.14.0+dfsg'
    
    Update to upstream version '2.14.0+dfsg'
    with Debian dir ac2d43771032130480ff704d3c148bd7a2f05457

commit 9773f0b9f65a9f78758e08c1618799fe8743de09
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Apr 10 17:59:31 2022 +0200

    New upstream version 2.14.0+dfsg

commit ac485f3b388208cfc3583bd197d2848ba73252cd
Author: Michael R. Crusoe <michael.crusoe@gmail.com>
Date:   Sun Apr 10 17:59:25 2022 +0200

    routine-update: New upstream version
Created: 2022-04-10 Last update: 2023-03-30 16:32
lintian reports 14 warnings normal
Lintian reports 14 warnings about this package. You should make the package lintian clean getting rid of them.
Created: 2021-01-27 Last update: 2022-09-22 13:10
debian/patches: 3 patches to forward upstream low

Among the 20 debian patches available in version 2.13.2+dfsg-3 of the package, we noticed the following issues:

  • 3 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2023-02-27 20:59
Build log checks report 1 warning low
Build log checks report 1 warning
Created: 2021-11-08 Last update: 2021-11-08 21:03
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.6.2 instead of 4.6.0).
Created: 2022-05-11 Last update: 2022-12-17 19:17
testing migrations
  • excuses:
    • Migration status for trinityrnaseq (- to 2.13.2+dfsg-3): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Updating trinityrnaseq would introduce bugs in testing: #1006336
    • ∙ ∙ blocked by freeze: is not in testing
    • Additional info:
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/t/trinityrnaseq.html
    • ∙ ∙ autopkgtest for trinityrnaseq/2.13.2+dfsg-3: amd64: Ignored failure, arm64: Ignored failure, armel: No test results, armhf: No test results, i386: No test results, ppc64el: No test results, s390x: No test results
    • ∙ ∙ 502 days old (needed 20 days)
    • Not considered
news
[rss feed]
  • [2022-04-05] trinityrnaseq REMOVED from testing (Debian testing watch)
  • [2021-11-21] trinityrnaseq 2.13.2+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2021-11-15] Accepted trinityrnaseq 2.13.2+dfsg-3 (source) into unstable (Pierre Gruet)
  • [2021-11-13] trinityrnaseq 2.13.2+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2021-11-08] Accepted trinityrnaseq 2.13.2+dfsg-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2021-11-08] Accepted trinityrnaseq 2.13.2+dfsg-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2021-09-30] trinityrnaseq 2.11.0+dfsg-6 MIGRATED to testing (Debian testing watch)
  • [2021-09-29] trinityrnaseq REMOVED from testing (Debian testing watch)
  • [2021-01-24] trinityrnaseq 2.11.0+dfsg-6 MIGRATED to testing (Debian testing watch)
  • [2021-01-19] Accepted trinityrnaseq 2.11.0+dfsg-6 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2021-01-19] Accepted trinityrnaseq 2.11.0+dfsg-5 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2021-01-19] Accepted trinityrnaseq 2.11.0+dfsg-4 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-10-30] trinityrnaseq 2.11.0+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2020-10-24] Accepted trinityrnaseq 2.11.0+dfsg-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-10-13] Accepted trinityrnaseq 2.11.0+dfsg-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-10-09] Accepted trinityrnaseq 2.11.0+dfsg-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2020-08-06] trinityrnaseq REMOVED from testing (Debian testing watch)
  • [2020-05-03] trinityrnaseq 2.10.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2020-04-28] Accepted trinityrnaseq 2.10.0+dfsg-1 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-07] trinityrnaseq 2.6.6+dfsg-6 MIGRATED to testing (Debian testing watch)
  • [2019-01-04] Accepted trinityrnaseq 2.6.6+dfsg-6 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-03] Accepted trinityrnaseq 2.6.6+dfsg-5 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-02] Accepted trinityrnaseq 2.6.6+dfsg-4 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2019-01-01] Accepted trinityrnaseq 2.6.6+dfsg-3 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2018-12-31] Accepted trinityrnaseq 2.6.6+dfsg-2 (source) into unstable (Michael R. Crusoe) (signed by: Michael Robin Crusoe)
  • [2018-12-14] Accepted trinityrnaseq 2.6.6+dfsg-1 (source) into unstable (Andreas Tille)
  • [2018-08-19] trinityrnaseq REMOVED from testing (Debian testing watch)
  • [2018-02-22] trinityrnaseq 2.5.1+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2018-02-17] Accepted trinityrnaseq 2.5.1+dfsg-2 (source) into unstable (Andreas Tille)
  • [2018-02-17] trinityrnaseq 2.5.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 3
  • RC: 1
  • I&N: 2
  • M&W: 0
  • F&P: 0
  • patch: 0
links
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  • lintian (0, 14)
  • buildd: logs, checks, cross
  • popcon
  • browse source code
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  • screenshots
  • debian patches
  • debci
ubuntu Ubuntu logo [Information about Ubuntu for Debian Developers]
  • version: 2.13.2+dfsg-3

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