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r-bioc-ioniser

Quality Assessment Tools for Oxford Nanopore MinION data

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general
  • source: r-bioc-ioniser (main)
  • version: 2.35.0+dfsg-2
  • maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD]
  • arch: all
  • std-ver: 4.7.4
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • oldstable: 2.22.0+dfsg-1
  • stable: 2.30.0+dfsg-2
  • unstable: 2.35.0+dfsg-2
versioned links
  • 2.22.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.30.0+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 2.35.0+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • r-bioc-ioniser
action needed
Debci reports failed tests high
  • unstable: pass (log)
    The tests ran in 0:02:06
    Last run: 2026-05-24T23:31:04.000Z
    Previous status: unknown

  • testing: fail (log)
    The tests ran in 0:00:11
    Last run: 2025-11-27T16:29:58.000Z
    Previous status: unknown

  • stable: pass (log)
    The tests ran in 0:01:10
    Last run: 2026-07-15T19:58:32.000Z
    Previous status: unknown

Created: 2025-11-27 Last update: 2026-09-25 23:02
debian/patches: 1 patch to forward upstream low

Among the 2 debian patches available in version 2.35.0+dfsg-2 of the package, we noticed the following issues:

  • 1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2026-08-12 Last update: 2026-09-24 15:34
testing migrations
  • This package is part of the ongoing testing transition known as r-api-bioc-3.23. Please avoid uploads unrelated to this transition, they would likely delay it and require supplementary work from the release managers. On the other hand, if your package has problems preventing it to migrate to testing, please fix them as soon as possible. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
  • excuses:
    • Migrates after: r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-biostrings, r-bioc-rhdf5, r-bioc-shortread, r-bioc-xvector
    • Migration status for r-bioc-ioniser (- to 2.35.0+dfsg-2): BLOCKED: Rejected/violates migration policy/introduces a regression
    • Issues preventing migration:
    • ∙ ∙ Updating r-bioc-ioniser would introduce bugs in testing: #1136926
    • ∙ ∙ Build-Depends(-Arch): r-bioc-ioniser r-bioc-biocgenerics (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-ioniser r-bioc-biocparallel (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-ioniser r-bioc-biostrings
    • ∙ ∙ Build-Depends(-Arch): r-bioc-ioniser r-bioc-rhdf5
    • ∙ ∙ Build-Depends(-Arch): r-bioc-ioniser r-bioc-shortread
    • ∙ ∙ Build-Depends(-Arch): r-bioc-ioniser r-bioc-xvector
    • ∙ ∙ Depends: r-bioc-ioniser r-bioc-biocgenerics (not considered)
    • ∙ ∙ Depends: r-bioc-ioniser r-bioc-biocparallel (not considered)
    • ∙ ∙ Depends: r-bioc-ioniser r-bioc-biostrings
    • ∙ ∙ Depends: r-bioc-ioniser r-bioc-rhdf5
    • ∙ ∙ Depends: r-bioc-ioniser r-bioc-shortread
    • ∙ ∙ Depends: r-bioc-ioniser r-bioc-xvector
    • Additional info (not blocking):
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-ioniser.html
    • ∙ ∙ Autopkgtest skipped on armhf: not installable (which is allowed)
    • ∙ ∙ Autopkgtest skipped on i386: not installable (which is allowed)
    • ∙ ∙ Autopkgtest for r-bioc-ioniser/2.35.0+dfsg-2: amd64: Pass, arm64: Pass, ppc64el: Pass, riscv64: Pass
    • ∙ ∙ Reproduced on amd64 - info
    • ∙ ∙ Reproduced on arm64 - info
    • ∙ ∙ Reproduced on armhf - info
    • ∙ ∙ Reproduced on i386 - info
    • ∙ ∙ Required age reduced by 3 days because of autopkgtest
    • ∙ ∙ 2 days old (needed 2 days)
    • Not considered
news
[rss feed]
  • [2026-09-24] Accepted r-bioc-ioniser 2.35.0+dfsg-2 (source) into unstable (Charles Plessy)
  • [2026-08-11] Accepted r-bioc-ioniser 2.35.0+dfsg-1 (source all) into unstable (Steffen Moeller)
  • [2026-03-15] Accepted r-bioc-ioniser 2.30.0+dfsg-3 (source) into unstable (Charles Plessy)
  • [2025-11-24] r-bioc-ioniser REMOVED from testing (Debian testing watch)
  • [2025-02-01] r-bioc-ioniser 2.30.0+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2025-01-13] Accepted r-bioc-ioniser 2.30.0+dfsg-2 (source) into unstable (Michael R. Crusoe)
  • [2025-01-02] r-bioc-ioniser REMOVED from testing (Debian testing watch)
  • [2024-12-08] r-bioc-ioniser 2.28.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2024-12-07] r-bioc-ioniser REMOVED from testing (Debian testing watch)
  • [2024-11-29] Accepted r-bioc-ioniser 2.30.0+dfsg-1 (source) into experimental (Michael R. Crusoe)
  • [2024-10-04] r-bioc-ioniser 2.28.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2024-08-18] Accepted r-bioc-ioniser 2.28.0+dfsg-1 (source) into unstable (Michael R. Crusoe)
  • [2024-07-14] Accepted r-bioc-ioniser 2.28.0+dfsg-1~0exp (source) into experimental (Michael R. Crusoe)
  • [2024-06-25] r-bioc-ioniser REMOVED from testing (Debian testing watch)
  • [2024-04-26] r-bioc-ioniser 2.26.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2024-03-22] r-bioc-ioniser REMOVED from testing (Debian testing watch)
  • [2023-12-21] r-bioc-ioniser 2.26.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2023-12-21] r-bioc-ioniser 2.26.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2023-12-01] Accepted r-bioc-ioniser 2.26.0+dfsg-1 (source) into unstable (Andreas Tille)
  • [2023-07-27] Accepted r-bioc-ioniser 2.24.0+dfsg-1 (source) into unstable (Andreas Tille)
  • [2023-07-14] r-bioc-ioniser REMOVED from testing (Debian testing watch)
  • [2022-12-05] r-bioc-ioniser 2.22.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-11-21] Accepted r-bioc-ioniser 2.22.0+dfsg-1 (source) into unstable (Andreas Tille)
  • [2022-05-24] r-bioc-ioniser 2.20.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-05-24] r-bioc-ioniser 2.20.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-05-16] Accepted r-bioc-ioniser 2.20.0+dfsg-1 (source) into unstable (Andreas Tille)
  • [2021-12-03] r-bioc-ioniser 2.18.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2021-11-25] Accepted r-bioc-ioniser 2.18.0+dfsg-1 (source) into unstable (Andreas Tille)
  • [2021-10-01] r-bioc-ioniser 2.16.0+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2021-09-28] Accepted r-bioc-ioniser 2.16.0+dfsg-2 (source) into unstable (Nilesh Patra)
  • 1
  • 2
bugs [bug history graph]
  • all: 1
  • RC: 1
  • I&N: 0
  • M&W: 0
  • F&P: 0
  • patch: 0
links
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