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r-bioc-shortread
GNU R classes and methods for high-throughput short-read sequencing data
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general
source:
r-bioc-shortread
(
main
)
version:
1.64.0-3
maintainer:
Debian R Packages Maintainers
(
archive
)
(
DMD
)
(
LowNMU
)
uploaders:
Andreas Tille
[
DMD
]
arch:
any
std-ver:
4.7.0
VCS:
Git
(
Browse
,
QA
)
versions
[more versions can be listed by madison]
[old versions available from snapshot.debian.org]
[pool directory]
o-o-stable:
1.48.0-2
oldstable:
1.56.1-1
stable:
1.64.0-3
unstable:
1.64.0-3
versioned links
1.48.0-2:
[.dsc, use dget on this link to retrieve source package]
[changelog]
[copyright]
[rules]
[control]
1.56.1-1:
[.dsc, use dget on this link to retrieve source package]
[changelog]
[copyright]
[rules]
[control]
1.64.0-3:
[.dsc, use dget on this link to retrieve source package]
[changelog]
[copyright]
[rules]
[control]
binaries
r-bioc-shortread
action needed
Debci
reports
failed tests
high
unstable
:
pass
(
log
)
The tests ran in 0:02:03
Last run: 2025-11-05T00:40:53.000Z
Previous status:
unknown
testing
:
fail
(
log
)
The tests ran in 0:00:20
Last run: 2025-11-26T11:13:55.000Z
Previous status:
unknown
stable
:
pass
(
log
)
The tests ran in 0:01:51
Last run: 2025-11-09T07:41:40.000Z
Previous status:
unknown
A new upstream version is available:
1.68.0
high
A new upstream version
1.68.0
is available, you should consider packaging it.
The package has not entered testing even though the delay is over
normal
The package has not entered
testing
even though the 5-day delay is over.
Check why
.
lintian reports
1 warning
normal
Lintian reports
1 warning
about this package. You should make the package
lintian clean
getting rid of them.
Standards version of the package is outdated.
wishlist
The package should be updated to follow the last version of
Debian Policy
(Standards-Version
4.7.2
instead of
4.7.0
).
testing migrations
excuses
:
Migration status: Blocked. Can't migrate due to a non-migratable dependency. Check status below.
Blocked by:
r-bioc-genomeinfodb
Migrates after:
r-bioc-biostrings
,
r-bioc-genomicalignments
,
r-bioc-genomicranges
,
r-bioc-pwalign
,
r-bioc-rsamtools
Migration status for r-bioc-shortread (- to 1.64.0-3): BLOCKED: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
Issues preventing migration:
∙ ∙ Build-Depends(-Arch): r-bioc-shortread
r-bioc-genomeinfodb
(not considered)
∙ ∙ Depends: r-bioc-shortread
r-bioc-genomeinfodb
(not considered)
∙ ∙ Invalidated by build-dependency
∙ ∙ Invalidated by dependency
∙ ∙ Build-Depends(-Arch): r-bioc-shortread
r-bioc-biostrings
∙ ∙ Build-Depends(-Arch): r-bioc-shortread
r-bioc-genomicalignments
∙ ∙ Build-Depends(-Arch): r-bioc-shortread
r-bioc-genomicranges
∙ ∙ Build-Depends(-Arch): r-bioc-shortread
r-bioc-pwalign
∙ ∙ Build-Depends(-Arch): r-bioc-shortread
r-bioc-rsamtools
∙ ∙ Depends: r-bioc-shortread
r-bioc-biostrings
∙ ∙ Depends: r-bioc-shortread
r-bioc-genomicalignments
∙ ∙ Depends: r-bioc-shortread
r-bioc-genomicranges
∙ ∙ Depends: r-bioc-shortread
r-bioc-pwalign
∙ ∙ Depends: r-bioc-shortread
r-bioc-rsamtools
Additional info (not blocking):
∙ ∙ Piuparts tested OK -
https://piuparts.debian.org/sid/source/r/r-bioc-shortread.html
∙ ∙ Autopkgtest for
r-bioc-shortread
/1.64.0-3:
amd64
:
Pass
,
arm64
:
Pass
,
ppc64el
:
Pass
,
riscv64
:
No tests, superficial or marked flaky
♻
,
s390x
:
Pass
∙ ∙ Reproducible on amd64 -
info
♻
∙ ∙ Reproducible on arm64 -
info
♻
∙ ∙ 307 days old (needed 5 days)
Not considered
news
[rss feed]
[
2025-11-24
]
r-bioc-shortread REMOVED from testing
(
Debian testing watch
)
[
2025-02-01
]
r-bioc-shortread 1.64.0-3 MIGRATED to testing
(
Debian testing watch
)
[
2025-01-27
]
Accepted r-bioc-shortread 1.64.0-3 (source) into unstable
(
Michael R. Crusoe
)
[
2025-01-21
]
r-bioc-shortread REMOVED from testing
(
Debian testing watch
)
[
2025-01-13
]
Accepted r-bioc-shortread 1.64.0-2 (source) into unstable
(
Michael R. Crusoe
)
[
2024-11-29
]
Accepted r-bioc-shortread 1.64.0-1 (source) into experimental
(
Michael R. Crusoe
)
[
2024-09-10
]
r-bioc-shortread 1.62.0-1 MIGRATED to testing
(
Debian testing watch
)
[
2024-08-18
]
Accepted r-bioc-shortread 1.62.0-1 (source) into unstable
(
Michael R. Crusoe
)
[
2024-07-23
]
Accepted r-bioc-shortread 1.62.0-1~0exp1 (source) into experimental
(
Michael R. Crusoe
)
[
2024-07-14
]
Accepted r-bioc-shortread 1.62.0-1~0exp (source) into experimental
(
Michael R. Crusoe
)
[
2024-06-25
]
r-bioc-shortread REMOVED from testing
(
Debian testing watch
)
[
2024-04-26
]
r-bioc-shortread 1.60.0-2 MIGRATED to testing
(
Debian testing watch
)
[
2024-04-05
]
r-bioc-shortread REMOVED from testing
(
Debian testing watch
)
[
2023-12-21
]
r-bioc-shortread 1.60.0-2 MIGRATED to testing
(
Debian testing watch
)
[
2023-12-18
]
Accepted r-bioc-shortread 1.60.0-2 (source) into unstable
(
Andreas Tille
)
[
2023-12-01
]
Accepted r-bioc-shortread 1.60.0-1 (source) into unstable
(
Andreas Tille
)
[
2023-07-27
]
Accepted r-bioc-shortread 1.58.0-1 (source) into unstable
(
Andreas Tille
)
[
2023-07-14
]
r-bioc-shortread REMOVED from testing
(
Debian testing watch
)
[
2022-12-05
]
r-bioc-shortread 1.56.1-1 MIGRATED to testing
(
Debian testing watch
)
[
2022-11-21
]
Accepted r-bioc-shortread 1.56.1-1 (source) into unstable
(
Andreas Tille
)
[
2022-05-24
]
r-bioc-shortread 1.54.0-1 MIGRATED to testing
(
Debian testing watch
)
[
2022-05-16
]
Accepted r-bioc-shortread 1.54.0-1 (source) into unstable
(
Andreas Tille
)
[
2021-12-03
]
r-bioc-shortread 1.52.0-1 MIGRATED to testing
(
Debian testing watch
)
[
2021-11-25
]
Accepted r-bioc-shortread 1.52.0-1 (source) into unstable
(
Andreas Tille
)
[
2021-09-29
]
r-bioc-shortread 1.50.0-1 MIGRATED to testing
(
Debian testing watch
)
[
2021-09-07
]
Accepted r-bioc-shortread 1.50.0-1 (source) into unstable
(
Andreas Tille
)
[
2021-02-09
]
r-bioc-shortread 1.48.0-2 MIGRATED to testing
(
Debian testing watch
)
[
2021-02-09
]
r-bioc-shortread 1.48.0-2 MIGRATED to testing
(
Debian testing watch
)
[
2021-02-07
]
Accepted r-bioc-shortread 1.48.0-2 (source) into unstable
(
Andreas Tille
)
[
2020-11-23
]
r-bioc-shortread 1.48.0-1 MIGRATED to testing
(
Debian testing watch
)
1
2
bugs
[bug history graph]
all:
0
links
homepage
lintian
(
0
,
1
)
buildd:
logs
,
cross
popcon
browse source code
edit tags
other distros
screenshots
debci
ubuntu
[Information about Ubuntu for Debian Developers]
version:
1.64.0-3
![[bug history graph]](https://qa.debian.org/data/bts/graphs/r/r-bioc-shortread.png){kind=link}