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general
  • source: sra-sdk (main)
  • version: 3.2.1+dfsg-6
  • maintainer: Debian Med Packaging Team (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD] – Charles Plessy [DMD] – Aaron M. Ucko [DMD]
  • arch: all amd64 arm64
  • std-ver: 4.7.3
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 2.10.9+dfsg-2
  • oldstable: 3.0.3+dfsg-6~deb12u1
  • stable: 3.2.1+dfsg-4
  • testing: 3.2.1+dfsg-5
  • unstable: 3.2.1+dfsg-6
versioned links
  • 2.10.9+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 3.0.3+dfsg-6~deb12u1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 3.2.1+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 3.2.1+dfsg-5: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 3.2.1+dfsg-6: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • libncbi-ngs-dev
  • libncbi-ngs3
  • libngs-c++-dev
  • libngs-c++3
  • libngs-java
  • libngs-java-doc
  • libngs-jni
  • python3-ngs
  • sra-toolkit
action needed
Marked for autoremoval on 29 March: #1126172 high
Version 3.2.1+dfsg-5 of sra-sdk is marked for autoremoval from testing on Sun 29 Mar 2026. It is affected by #1126172. The removal of sra-sdk will also cause the removal of (transitive) reverse dependencies: artemis, beagle, chromhmm, drop-seq, fastqc, genomicsdb, gkl, htsjdk, igv, libgoby-java, libhttp-nio-java, paleomix, parallel-fastq-dump, picard-tools, pilon, seqsero, shovill, skesa, snippy, snpeff, snpsift, surankco, unicycler. You should try to prevent the removal by fixing these RC bugs.
Created: 2026-02-18 Last update: 2026-02-28 16:32
Problems while searching for a new upstream version high
uscan had problems while searching for a new upstream version:
unrecognized option debianversionmangle: s/\+dfsg//g
Created: 2026-02-28 Last update: 2026-02-28 13:18
A new upstream version is available: 4760-2.9.7 high
A new upstream version 4760-2.9.7 is available, you should consider packaging it.
Created: 2025-12-04 Last update: 2026-02-28 13:18
debian/patches: 22 patches to forward upstream low

Among the 22 debian patches available in version 3.2.1+dfsg-6 of the package, we noticed the following issues:

  • 22 patches where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.
Created: 2023-02-26 Last update: 2026-02-28 08:31
testing migrations
  • This package will soon be part of the auto-abseil transition. You might want to ensure that your package is ready for it. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
  • excuses:
    • Migration status for sra-sdk (3.2.1+dfsg-5 to 3.2.1+dfsg-6): Waiting for test results or another package, or too young (no action required now - check later)
    • Issues preventing migration:
    • ∙ ∙ Lintian check waiting for test results - info
    • ∙ ∙ Too young, only 0 of 2 days old
    • Additional info (not blocking):
    • ∙ ∙ Updating sra-sdk will fix bugs in testing: #1126172
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/s/sra-sdk.html
    • ∙ ∙ Autopkgtest skipped on i386: not installable (which is allowed)
    • ∙ ∙ Autopkgtest skipped on ppc64el: not installable (which is allowed)
    • ∙ ∙ Autopkgtest skipped on riscv64: not installable (which is allowed)
    • ∙ ∙ Autopkgtest skipped on s390x: not installable (which is allowed)
    • ∙ ∙ Autopkgtest for sra-sdk/3.2.1+dfsg-6: amd64: Pass, arm64: Pass
    • ∙ ∙ Reproducible on amd64
    • ∙ ∙ Reproducible on arm64
    • ∙ ∙ Reproducible on armhf
    • ∙ ∙ Reproducible on i386
    • ∙ ∙ Reproducible on ppc64el
    • ∙ ∙ Required age reduced by 3 days because of autopkgtest
    • Not considered
news
[rss feed]
  • [2026-02-27] Accepted sra-sdk 3.2.1+dfsg-6 (source) into unstable (Aaron M. Ucko)
  • [2025-08-19] sra-sdk 3.2.1+dfsg-5 MIGRATED to testing (Debian testing watch)
  • [2025-08-17] Accepted sra-sdk 3.2.1+dfsg-5 (source) into unstable (Aaron M. Ucko)
  • [2025-04-27] sra-sdk 3.2.1+dfsg-4 MIGRATED to testing (Debian testing watch)
  • [2025-04-16] Accepted sra-sdk 3.2.1+dfsg-4 (source) into unstable (Aaron M. Ucko)
  • [2025-04-15] sra-sdk 3.2.1+dfsg-3 MIGRATED to testing (Debian testing watch)
  • [2025-04-10] Accepted sra-sdk 3.2.1+dfsg-3 (source) into unstable (Aaron M. Ucko)
  • [2025-04-10] Accepted sra-sdk 3.2.1+dfsg-2 (source) into experimental (Aaron M. Ucko)
  • [2025-04-09] Accepted sra-sdk 3.2.1+dfsg-1 (source) into experimental (Aaron M. Ucko)
  • [2025-03-14] sra-sdk 3.0.9+dfsg-7.1 MIGRATED to testing (Debian testing watch)
  • [2025-03-11] Accepted sra-sdk 3.0.9+dfsg-7.1 (source) into unstable (Stefano Rivera)
  • [2024-11-23] sra-sdk 3.0.9+dfsg-7 MIGRATED to testing (Debian testing watch)
  • [2024-10-18] Accepted sra-sdk 3.0.9+dfsg-7 (source) into unstable (Aaron M. Ucko)
  • [2024-08-22] sra-sdk 3.0.3+dfsg-9 MIGRATED to testing (Debian testing watch)
  • [2024-08-20] Accepted sra-sdk 3.0.9+dfsg-6 (source) into experimental (Pierre Gruet)
  • [2024-08-20] Accepted sra-sdk 3.0.9+dfsg-5 (source) into experimental (Pierre Gruet)
  • [2024-08-20] Accepted sra-sdk 3.0.3+dfsg-9 (source) into unstable (Pierre Gruet)
  • [2024-07-13] sra-sdk 3.0.3+dfsg-8 MIGRATED to testing (Debian testing watch)
  • [2024-07-12] Accepted sra-sdk 3.0.9+dfsg-4 (source) into experimental (Pierre Gruet)
  • [2024-07-11] Accepted sra-sdk 3.0.3+dfsg-8 (source) into unstable (Pierre Gruet)
  • [2024-05-08] sra-sdk 3.0.3+dfsg-7 MIGRATED to testing (Debian testing watch)
  • [2024-05-06] Accepted sra-sdk 3.0.9+dfsg-3 (source) into experimental (Aaron M. Ucko)
  • [2024-05-06] Accepted sra-sdk 3.0.3+dfsg-7 (source) into unstable (Aaron M. Ucko)
  • [2024-04-12] Accepted sra-sdk 3.0.9+dfsg-2 (source) into experimental (Aaron M. Ucko)
  • [2024-04-12] Accepted sra-sdk 3.0.9+dfsg-1 (source) into experimental (Aaron M. Ucko)
  • [2023-07-15] Accepted sra-sdk 3.0.3+dfsg-6~deb12u1 (source) into proposed-updates (Debian FTP Masters) (signed by: Aaron M. Ucko)
  • [2023-06-30] sra-sdk 3.0.3+dfsg-6 MIGRATED to testing (Debian testing watch)
  • [2023-06-28] Accepted sra-sdk 3.0.3+dfsg-6 (source) into unstable (Aaron M. Ucko)
  • [2023-03-06] sra-sdk 3.0.3+dfsg-5 MIGRATED to testing (Debian testing watch)
  • [2023-02-24] Accepted sra-sdk 3.0.3+dfsg-5 (source) into unstable (Andreas Tille)
  • 1
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bugs [bug history graph]
  • all: 0
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  • version: 3.2.1+dfsg-4ubuntu5

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