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r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis

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general

source: r-bioc-deseq2 (main)
version: 1.46.0+dfsg-3
maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD] – Michael R. Crusoe [DMD]
arch: any
std-ver: 4.7.3
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.30.1+dfsg-1
oldstable: 1.38.3+dfsg-1
stable: 1.46.0+dfsg-2
unstable: 1.46.0+dfsg-3

versioned links

1.30.1+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.38.3+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.46.0+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.46.0+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

r-bioc-deseq2

action needed

Debci reports failed tests high

unstable: pass (log)
The tests ran in 0:03:00
Last run: 2025-12-17T17:48:18.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:00:17
Last run: 2025-11-26T13:20:09.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:02:51
Last run: 2025-11-08T17:39:54.000Z
Previous status: unknown

Created: 2025-11-26 Last update: 2026-03-16 04:02

A new upstream version is available: 1.50.2 high

A new upstream version 1.50.2 is available, you should consider packaging it.

Created: 2025-11-27 Last update: 2026-03-16 01:31

debian/patches: 1 patch with invalid metadata high

Among the 1 debian patch available in version 1.46.0+dfsg-3 of the package, we noticed the following issues:

1 patch with invalid metadata that ought to be fixed.

Created: 2023-02-26 Last update: 2026-03-15 12:31

lintian reports 1 warning normal

Lintian reports 1 warning about this package. You should make the package lintian clean getting rid of them.

Created: 2025-04-10 Last update: 2025-04-10 09:31

testing migrations

excuses:
- Migrates after: r-bioc-biobase, r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-genomicranges, r-bioc-iranges, r-bioc-matrixgenerics, r-bioc-s4vectors, r-bioc-summarizedexperiment
- Migration status for r-bioc-deseq2 (- to 1.46.0+dfsg-3): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ r-bioc-deseq2 unsatisfiable Build-Depends(-Arch) on s390x: architecture-is-little-endian
- ∙ ∙ Missing build on s390x
- ∙ ∙ Autopkgtest deferred on s390x: missing arch:s390x build
- ∙ ∙ Autopkgtest for r-bioc-deseq2/1.46.0+dfsg-3: amd64: Pass, arm64: Pass, ppc64el: Test triggered, riscv64: Pass
- ∙ ∙ Lintian check waiting for test results on s390x - info
- ∙ ∙ Too young, only 1 of 5 days old
- ∙ ∙ Build-Depends(-Arch): r-bioc-deseq2 r-bioc-biobase (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-deseq2 r-bioc-biocgenerics (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-deseq2 r-bioc-biocparallel (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-deseq2 r-bioc-genomicranges (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-deseq2 r-bioc-iranges (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-deseq2 r-bioc-matrixgenerics (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-deseq2 r-bioc-s4vectors (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-deseq2 r-bioc-summarizedexperiment (not considered)
- ∙ ∙ Depends: r-bioc-deseq2 r-bioc-biobase (not considered)
- ∙ ∙ Depends: r-bioc-deseq2 r-bioc-biocgenerics (not considered)
- ∙ ∙ Depends: r-bioc-deseq2 r-bioc-biocparallel (not considered)
- ∙ ∙ Depends: r-bioc-deseq2 r-bioc-genomicranges (not considered)
- ∙ ∙ Depends: r-bioc-deseq2 r-bioc-iranges (not considered)
- ∙ ∙ Depends: r-bioc-deseq2 r-bioc-matrixgenerics (not considered)
- ∙ ∙ Depends: r-bioc-deseq2 r-bioc-s4vectors (not considered)
- ∙ ∙ Depends: r-bioc-deseq2 r-bioc-summarizedexperiment (not considered)
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-deseq2.html
- ∙ ∙ Reproduced on amd64
- ∙ ∙ Reproducibility check waiting for results on arm64
- ∙ ∙ Reproduced on armhf
- ∙ ∙ Reproduced on i386
- ∙ ∙ Reproducibility check waiting for results on ppc64el
- Not considered

news

[2026-03-15] Accepted r-bioc-deseq2 1.46.0+dfsg-3 (source) into unstable (Charles Plessy)
[2025-11-24] r-bioc-deseq2 REMOVED from testing (Debian testing watch)
[2025-01-22] r-bioc-deseq2 1.46.0+dfsg-2 MIGRATED to testing (Debian testing watch)
[2025-01-21] r-bioc-deseq2 REMOVED from testing (Debian testing watch)
[2025-01-13] Accepted r-bioc-deseq2 1.46.0+dfsg-2 (source) into unstable (Michael R. Crusoe)
[2024-11-28] Accepted r-bioc-deseq2 1.46.0+dfsg-1 (source) into experimental (Michael R. Crusoe)
[2024-09-10] r-bioc-deseq2 1.44.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2024-08-17] Accepted r-bioc-deseq2 1.44.0+dfsg-1 (source) into unstable (Michael R. Crusoe)
[2024-08-06] Accepted r-bioc-deseq2 1.44.0+dfsg-1~0exp1 (source) into experimental (Michael R. Crusoe)
[2024-07-14] Accepted r-bioc-deseq2 1.44.0+dfsg-1~0exp (source) into experimental (Michael R. Crusoe)
[2024-06-25] r-bioc-deseq2 REMOVED from testing (Debian testing watch)
[2024-03-30] r-bioc-deseq2 1.42.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2024-03-11] Accepted r-bioc-deseq2 1.42.1+dfsg-1 (source) into unstable (Michael R. Crusoe)
[2023-12-17] r-bioc-deseq2 1.42.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-11-30] Accepted r-bioc-deseq2 1.42.0+dfsg-1 (source) into unstable (Andreas Tille)
[2023-09-12] r-bioc-deseq2 1.40.2+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-07-27] Accepted r-bioc-deseq2 1.40.2+dfsg-1 (source) into unstable (Andreas Tille)
[2023-07-14] r-bioc-deseq2 REMOVED from testing (Debian testing watch)
[2023-01-26] r-bioc-deseq2 1.38.3+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-01-21] Accepted r-bioc-deseq2 1.38.3+dfsg-1 (source) into unstable (Andreas Tille)
[2022-12-25] r-bioc-deseq2 1.38.2+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-12-19] Accepted r-bioc-deseq2 1.38.2+dfsg-1 (source) into unstable (Andreas Tille)
[2022-12-05] r-bioc-deseq2 1.38.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-11-21] Accepted r-bioc-deseq2 1.38.1+dfsg-1 (source) into unstable (Andreas Tille)
[2022-05-24] r-bioc-deseq2 1.36.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-05-16] Accepted r-bioc-deseq2 1.36.0+dfsg-1 (source) into unstable (Andreas Tille)
[2021-12-03] r-bioc-deseq2 1.34.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2021-12-03] r-bioc-deseq2 1.34.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2021-11-26] Accepted r-bioc-deseq2 1.34.0+dfsg-1 (source) into unstable (Andreas Tille)
[2021-09-30] r-bioc-deseq2 1.32.0+dfsg-3 MIGRATED to testing (Debian testing watch)

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bugs [bug history graph]

all: 0

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version: 1.46.0+dfsg-2

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