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r-bioc-deseq2

R package for RNA-Seq Differential Expression Analysis

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general

source: r-bioc-deseq2 (main)
version: 1.46.0+dfsg-2
maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD] – Michael R. Crusoe [DMD]
arch: any
std-ver: 4.7.0
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.22.2+dfsg-1
oldstable: 1.30.1+dfsg-1
stable: 1.38.3+dfsg-1
testing: 1.44.0+dfsg-1
unstable: 1.46.0+dfsg-2

versioned links

1.22.2+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.30.1+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.38.3+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.44.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.46.0+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

r-bioc-deseq2

action needed

Debci reports failed tests high

unstable: fail (log)
The tests ran in an unknown time
Last run: 2025-01-13T18:25:52.000Z
Previous status: unknown

testing: fail (log)
The tests ran in an unknown time
Last run: 2025-01-18T23:11:21.000Z
Previous status: unknown

stable: pass (log)
The tests ran in an unknown time
Last run: 2024-10-19T20:52:23.000Z
Previous status: unknown

Created: 2024-11-26 Last update: 2025-01-20 17:01

debian/patches: 1 patch with invalid metadata high

Among the 1 debian patch available in version 1.46.0+dfsg-2 of the package, we noticed the following issues:

1 patch with invalid metadata that ought to be fixed.

Created: 2023-02-26 Last update: 2025-01-13 22:00

The package has not entered testing even though the delay is over normal

The package has not entered testing even though the 5-day delay is over. Check why.

Created: 2025-01-18 Last update: 2025-01-20 16:31

testing migrations

This package is part of the ongoing testing transition known as r-api-bioc-3.20. Please avoid uploads unrelated to this transition, they would likely delay it and require supplementary work from the release managers. On the other hand, if your package has problems preventing it to migrate to testing, please fix them as soon as possible. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
excuses:
- Migrates after: r-bioc-biocgenerics, r-bioc-summarizedexperiment
- Migration status for r-bioc-deseq2 (1.44.0+dfsg-1 to 1.46.0+dfsg-2): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ Removal request by auto-removals
- ∙ ∙ Trying to remove package, not update it
- ∙ ∙ Build-Depends(-Arch): r-bioc-deseq2 r-bioc-summarizedexperiment (not considered)
- ∙ ∙ Depends: r-bioc-deseq2 r-bioc-biocgenerics
- ∙ ∙ Depends: r-bioc-deseq2 r-bioc-summarizedexperiment (not considered)
- Additional info:
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-deseq2.html
- ∙ ∙ autopkgtest for r-bioc-deseq2/1.46.0+dfsg-2: amd64: Failed (not a regression), arm64: Failed (not a regression), riscv64: Failed (not a regression), s390x: Failed (not a regression)
- ∙ ∙ Reproducible on amd64 - info ♻
- ∙ ∙ Reproducible on arm64 - info ♻
- ∙ ∙ 7 days old (needed 5 days)
- ∙ ∙ Remove hint for (transitive) dependency: r-bioc-deseq2, r-bioc-genomicranges, r-bioc-summarizedexperiment
- Not considered

news

[2025-01-13] Accepted r-bioc-deseq2 1.46.0+dfsg-2 (source) into unstable (Michael R. Crusoe)
[2024-11-28] Accepted r-bioc-deseq2 1.46.0+dfsg-1 (source) into experimental (Michael R. Crusoe)
[2024-09-10] r-bioc-deseq2 1.44.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2024-08-17] Accepted r-bioc-deseq2 1.44.0+dfsg-1 (source) into unstable (Michael R. Crusoe)
[2024-08-06] Accepted r-bioc-deseq2 1.44.0+dfsg-1~0exp1 (source) into experimental (Michael R. Crusoe)
[2024-07-14] Accepted r-bioc-deseq2 1.44.0+dfsg-1~0exp (source) into experimental (Michael R. Crusoe)
[2024-06-25] r-bioc-deseq2 REMOVED from testing (Debian testing watch)
[2024-03-30] r-bioc-deseq2 1.42.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2024-03-11] Accepted r-bioc-deseq2 1.42.1+dfsg-1 (source) into unstable (Michael R. Crusoe)
[2023-12-17] r-bioc-deseq2 1.42.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-11-30] Accepted r-bioc-deseq2 1.42.0+dfsg-1 (source) into unstable (Andreas Tille)
[2023-09-12] r-bioc-deseq2 1.40.2+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-07-27] Accepted r-bioc-deseq2 1.40.2+dfsg-1 (source) into unstable (Andreas Tille)
[2023-07-14] r-bioc-deseq2 REMOVED from testing (Debian testing watch)
[2023-01-26] r-bioc-deseq2 1.38.3+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-01-21] Accepted r-bioc-deseq2 1.38.3+dfsg-1 (source) into unstable (Andreas Tille)
[2022-12-25] r-bioc-deseq2 1.38.2+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-12-19] Accepted r-bioc-deseq2 1.38.2+dfsg-1 (source) into unstable (Andreas Tille)
[2022-12-05] r-bioc-deseq2 1.38.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-11-21] Accepted r-bioc-deseq2 1.38.1+dfsg-1 (source) into unstable (Andreas Tille)
[2022-05-24] r-bioc-deseq2 1.36.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-05-16] Accepted r-bioc-deseq2 1.36.0+dfsg-1 (source) into unstable (Andreas Tille)
[2021-12-03] r-bioc-deseq2 1.34.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2021-12-03] r-bioc-deseq2 1.34.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2021-11-26] Accepted r-bioc-deseq2 1.34.0+dfsg-1 (source) into unstable (Andreas Tille)
[2021-09-30] r-bioc-deseq2 1.32.0+dfsg-3 MIGRATED to testing (Debian testing watch)
[2021-09-29] r-bioc-deseq2 REMOVED from testing (Debian testing watch)
[2021-09-28] Accepted r-bioc-deseq2 1.32.0+dfsg-3 (source) into unstable (Andreas Tille)
[2021-09-26] Accepted r-bioc-deseq2 1.32.0+dfsg-2 (source) into unstable (Andreas Tille)
[2021-09-13] Accepted r-bioc-deseq2 1.32.0+dfsg-1 (source) into unstable (Nilesh Patra)

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bugs [bug history graph]

all: 0

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version: 1.44.0+dfsg-1

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