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r-bioc-ensembldb

GNU R utilities to create and use an Ensembl based annotation database

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general

source: r-bioc-ensembldb (main)
version: 2.30.0+dfsg-4
maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD]
arch: all
std-ver: 4.7.3
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 2.14.0+dfsg-1
oldstable: 2.22.0+dfsg-1
stable: 2.30.0+dfsg-3
unstable: 2.30.0+dfsg-4

versioned links

2.14.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.22.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.30.0+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.30.0+dfsg-4: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

r-bioc-ensembldb

action needed

Debci reports failed tests high

unstable: pass (log)
The tests ran in 0:01:56
Last run: 2025-12-17T18:25:12.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:00:20
Last run: 2025-11-26T07:57:33.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:02:04
Last run: 2025-11-08T13:36:36.000Z
Previous status: unknown

Created: 2025-11-26 Last update: 2026-03-16 13:02

A new upstream version is available: 2.34.0 high

A new upstream version 2.34.0 is available, you should consider packaging it.

Created: 2025-11-27 Last update: 2026-03-16 08:02

debian/patches: 1 patch with invalid metadata, 1 patch to forward upstream high

Among the 2 debian patches available in version 2.30.0+dfsg-4 of the package, we noticed the following issues:

1 patch with invalid metadata that ought to be fixed.
1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2026-03-15 06:00

testing migrations

excuses:
- Migrates after: r-bioc-annotationdbi, r-bioc-annotationfilter, r-bioc-biobase, r-bioc-biocgenerics, r-bioc-biostrings, r-bioc-genomeinfodb, r-bioc-genomicfeatures, r-bioc-genomicranges, r-bioc-iranges, r-bioc-protgenerics, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-s4vectors
- Migration status for r-bioc-ensembldb (- to 2.30.0+dfsg-4): Waiting for test results or another package, or too young (no action required now - check later)
- Issues preventing migration:
- ∙ ∙ Too young, only 1 of 2 days old
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-annotationdbi
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-annotationfilter
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-biobase (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-biocgenerics (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-biostrings (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-genomeinfodb (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-genomicfeatures
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-genomicranges (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-iranges (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-protgenerics
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-rsamtools (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-rtracklayer
- ∙ ∙ Build-Depends(-Arch): r-bioc-ensembldb r-bioc-s4vectors (not considered)
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-annotationdbi
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-annotationfilter
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-biobase (not considered)
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-biocgenerics (not considered)
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-biostrings (not considered)
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-genomeinfodb (not considered)
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-genomicfeatures
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-genomicranges (not considered)
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-iranges (not considered)
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-protgenerics
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-rsamtools (not considered)
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-rtracklayer
- ∙ ∙ Depends: r-bioc-ensembldb r-bioc-s4vectors (not considered)
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-ensembldb.html
- ∙ ∙ Autopkgtest skipped on i386: not installable (which is allowed)
- ∙ ∙ Autopkgtest for r-bioc-ensembldb/2.30.0+dfsg-4: amd64: Pass, arm64: Pass, ppc64el: Pass, riscv64: Pass, s390x: Pass
- ∙ ∙ Reproduced on amd64
- ∙ ∙ Reproduced on arm64
- ∙ ∙ Reproduced on armhf
- ∙ ∙ Reproduced on i386
- ∙ ∙ Reproduced on ppc64el
- ∙ ∙ Required age reduced by 3 days because of autopkgtest
- Not considered

news

[2026-03-14] Accepted r-bioc-ensembldb 2.30.0+dfsg-4 (source) into unstable (Charles Plessy)
[2025-11-24] r-bioc-ensembldb REMOVED from testing (Debian testing watch)
[2025-01-22] r-bioc-ensembldb 2.30.0+dfsg-3 MIGRATED to testing (Debian testing watch)
[2025-01-21] r-bioc-ensembldb REMOVED from testing (Debian testing watch)
[2025-01-16] Accepted r-bioc-ensembldb 2.30.0+dfsg-3 (source) into unstable (Michael R. Crusoe)
[2025-01-13] Accepted r-bioc-ensembldb 2.30.0+dfsg-2 (source) into unstable (Michael R. Crusoe)
[2024-11-29] Accepted r-bioc-ensembldb 2.30.0+dfsg-1 (source) into experimental (Michael R. Crusoe)
[2024-09-10] r-bioc-ensembldb 2.28.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2024-09-05] Accepted r-bioc-ensembldb 2.28.1+dfsg-1 (source) into unstable (Michael R. Crusoe)
[2024-08-18] Accepted r-bioc-ensembldb 2.28.0+dfsg-1 (source) into unstable (Michael R. Crusoe)
[2024-07-22] Accepted r-bioc-ensembldb 2.28.0+dfsg-1~0exp1 (source) into experimental (Michael R. Crusoe)
[2024-07-14] Accepted r-bioc-ensembldb 2.28.0+dfsg-1~0exp (source) into experimental (Michael R. Crusoe)
[2024-06-25] r-bioc-ensembldb REMOVED from testing (Debian testing watch)
[2024-04-26] r-bioc-ensembldb 2.26.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2024-03-22] r-bioc-ensembldb REMOVED from testing (Debian testing watch)
[2023-12-17] r-bioc-ensembldb 2.26.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-12-01] Accepted r-bioc-ensembldb 2.26.0+dfsg-1 (source) into unstable (Charles Plessy)
[2023-10-14] r-bioc-ensembldb 2.24.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-09-29] Accepted r-bioc-ensembldb 2.24.1+dfsg-1 (source) into unstable (Andreas Tille)
[2023-07-27] Accepted r-bioc-ensembldb 2.24.0+dfsg-1 (source) into unstable (Andreas Tille)
[2023-07-14] r-bioc-ensembldb REMOVED from testing (Debian testing watch)
[2022-12-06] r-bioc-ensembldb 2.22.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-12-05] r-bioc-ensembldb REMOVED from testing (Debian testing watch)
[2022-12-05] r-bioc-ensembldb REMOVED from testing (Debian testing watch)
[2022-11-21] Accepted r-bioc-ensembldb 2.22.0+dfsg-1 (source) into unstable (Andreas Tille)
[2022-06-27] r-bioc-ensembldb 2.20.2+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-06-22] Accepted r-bioc-ensembldb 2.20.2+dfsg-1 (source) into unstable (Andreas Tille)
[2022-05-24] r-bioc-ensembldb 2.20.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-05-16] Accepted r-bioc-ensembldb 2.20.1+dfsg-1 (source) into unstable (Andreas Tille)
[2022-05-03] r-bioc-ensembldb 2.18.4+dfsg-1 MIGRATED to testing (Debian testing watch)

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bugs [bug history graph]

all: 0

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