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r-bioc-rtracklayer

GNU R interface to genome browsers and their annotation tracks

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general

source: r-bioc-rtracklayer (main)
version: 1.56.0-1
maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD]
arch: any
std-ver: 4.6.1
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.34.1-1
oldstable: 1.42.1-2
stable: 1.50.0-1
testing: 1.54.0-1
unstable: 1.56.0-1

versioned links

1.34.1-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.42.1-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.50.0-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.54.0-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.56.0-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

r-bioc-rtracklayer

action needed

1 binary package has unsatisfiable dependencies high

The dependencies of r-bioc-rtracklayer=1.54.0-1 cannot be satisfied in unstable on arm64, armel, mips64el, armhf, mipsel, i386, s390x, amd64, and ppc64el because: unsatisfied dependency on r-api-bioc-3.14

Created: 2022-05-13 Last update: 2022-05-16 23:00

Debci reports failed tests high

unstable: fail (log)
The tests ran in 0:00:33
Last run: 2021-09-04T23:35:03.000Z
Previous status: fail

testing: fail (log)
The tests ran in 0:01:34
Last run: 2021-09-28T22:22:09.000Z
Previous status: fail

stable: fail (log)
The tests ran in 0:01:31
Last run: 2022-05-02T19:31:03.000Z
Previous status: fail

Created: 2020-03-16 Last update: 2022-05-16 22:08

Marked for autoremoval on 15 June due to r-bioc-biostrings: #1009454, #1009467 high

Version 1.54.0-1 of r-bioc-rtracklayer is marked for autoremoval from testing on Wed 15 Jun 2022. It is affected by #1009454. The removal of r-bioc-rtracklayer will also cause the removal of (transitive) reverse dependencies: r-bioc-ballgown, r-bioc-biovizbase, r-bioc-bsgenome, r-bioc-cner, r-bioc-cummerbund, r-bioc-degnorm, r-bioc-edaseq, r-bioc-ensembldb, r-bioc-genelendatabase, r-bioc-genomicfeatures, r-bioc-genomicfiles, r-bioc-ggbio, r-bioc-goseq, r-bioc-gviz, r-bioc-isoformswitchanalyzer, r-bioc-mutationalpatterns, r-bioc-organismdbi, r-bioc-purecn, r-bioc-rgsepd, r-bioc-scrnaseq, r-bioc-structuralvariantannotation, r-bioc-tfbstools, r-bioc-titancna, r-bioc-tximeta, r-bioc-variantannotation. It depends (transitively) on r-bioc-biostrings, affected by #1009467. You should try to prevent the removal by fixing these RC bugs.

Created: 2022-04-19 Last update: 2022-05-16 22:05

Fails to build during reproducibility testing normal

A package building reproducibly enables third parties to verify that the source matches the distributed binaries. It has been identified that this source package produced different results, failed to build or had other issues in a test environment. Please read about how to improve the situation!

Created: 2022-05-04 Last update: 2022-05-16 20:41

Build log checks report 1 warning low

Build log checks report 1 warning

Created: 2021-11-26 Last update: 2021-11-26 05:36

testing migrations

This package is part of the ongoing testing transition known as r-api-bioc-3.15. Please avoid uploads unrelated to this transition, they would likely delay it and require supplementary work from the release managers. On the other hand, if your package has problems preventing it to migrate to testing, please fix them as soon as possible. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
excuses:
- Migrates after: r-bioc-biocgenerics
- Migration status for r-bioc-rtracklayer (1.54.0-1 to 1.56.0-1): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ autopkgtest for r-bioc-ballgown/2.26.0+dfsg-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-bsgenome/1.62.0-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-cner/1.30.0+dfsg-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Not a regression, i386: Regression ♻ (reference ♻), ppc64el: Not a regression, s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-cummerbund/2.36.0-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-ensembldb/2.18.4+dfsg-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-genelendatabase/1.30.0-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-genomicfeatures/1.46.5+dfsg-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-genomicfiles/1.30.0-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-ggbio/1.42.0-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-gviz/1.38.3+dfsg-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-isoformswitchanalyzer/1.16.0+ds-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-purecn/2.0.2+dfsg-2: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-structuralvariantannotation/1.10.1+ds-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-tfbstools/1.32.0+dfsg-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ autopkgtest for r-bioc-variantannotation/1.40.0-1: amd64: Regression ♻ (reference ♻), arm64: Regression ♻ (reference ♻), armhf: Regression ♻ (reference ♻), i386: Regression ♻ (reference ♻), ppc64el: Regression ♻ (reference ♻), s390x: Test in progress
- ∙ ∙ Too young, only 1 of 5 days old
- ∙ ∙ Depends: r-bioc-rtracklayer r-bioc-biocgenerics
- Additional info:
- ∙ ∙ Updating r-bioc-rtracklayer will fix bugs in testing: #1009454
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-rtracklayer.html
- Not considered

news

[2022-05-16] Accepted r-bioc-rtracklayer 1.56.0-1 (source) into unstable (Andreas Tille)
[2021-12-03] r-bioc-rtracklayer 1.54.0-1 MIGRATED to testing (Debian testing watch)
[2021-11-25] Accepted r-bioc-rtracklayer 1.54.0-1 (source) into unstable (Andreas Tille)
[2021-09-29] r-bioc-rtracklayer 1.52.1-1 MIGRATED to testing (Debian testing watch)
[2021-09-10] Accepted r-bioc-rtracklayer 1.52.1-1 (source) into unstable (Andreas Tille)
[2020-11-23] r-bioc-rtracklayer 1.50.0-1 MIGRATED to testing (Debian testing watch)
[2020-11-03] Accepted r-bioc-rtracklayer 1.50.0-1 (source) into unstable (Andreas Tille)
[2020-05-29] r-bioc-rtracklayer 1.48.0-1 MIGRATED to testing (Debian testing watch)
[2020-05-20] Accepted r-bioc-rtracklayer 1.48.0-1 (source) into unstable (Dylan Aïssi)
[2020-03-20] r-bioc-rtracklayer 1.46.0-2 MIGRATED to testing (Debian testing watch)
[2020-03-17] Accepted r-bioc-rtracklayer 1.46.0-2 (source) into unstable (Dylan Aïssi)
[2019-11-17] r-bioc-rtracklayer 1.46.0-1 MIGRATED to testing (Debian testing watch)
[2019-11-11] Accepted r-bioc-rtracklayer 1.46.0-1 (source) into unstable (Dylan Aïssi)
[2019-09-15] r-bioc-rtracklayer 1.44.4-1 MIGRATED to testing (Debian testing watch)
[2019-09-13] Accepted r-bioc-rtracklayer 1.44.4-1 (source) into unstable (Andreas Tille)
[2019-09-01] r-bioc-rtracklayer 1.44.3-1 MIGRATED to testing (Debian testing watch)
[2019-08-30] Accepted r-bioc-rtracklayer 1.44.3-1 (source) into unstable (Andreas Tille)
[2019-08-22] r-bioc-rtracklayer 1.44.2-1 MIGRATED to testing (Debian testing watch)
[2019-07-27] Accepted r-bioc-rtracklayer 1.44.2-1 (source) into unstable (Andreas Tille)
[2019-07-19] Accepted r-bioc-rtracklayer 1.44.0-1 (source) into unstable (Andreas Tille)
[2019-01-12] r-bioc-rtracklayer 1.42.1-2 MIGRATED to testing (Debian testing watch)
[2019-01-10] Accepted r-bioc-rtracklayer 1.42.1-2 (source) into unstable (Dylan Aïssi)
[2018-12-01] r-bioc-rtracklayer 1.42.1-1 MIGRATED to testing (Debian testing watch)
[2018-11-29] Accepted r-bioc-rtracklayer 1.42.1-1 (source) into unstable (Dylan Aïssi)
[2018-11-26] r-bioc-rtracklayer 1.42.0-1 MIGRATED to testing (Debian testing watch)
[2018-11-12] Accepted r-bioc-rtracklayer 1.42.0-1 (source) into unstable (Dylan Aïssi)
[2018-09-08] r-bioc-rtracklayer 1.40.6-1 MIGRATED to testing (Debian testing watch)
[2018-09-06] Accepted r-bioc-rtracklayer 1.40.6-1 (source) into unstable (Andreas Tille)
[2018-08-26] r-bioc-rtracklayer 1.40.5-1 MIGRATED to testing (Debian testing watch)
[2018-08-23] Accepted r-bioc-rtracklayer 1.40.5-1 (source) into unstable (Andreas Tille)

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bugs [bug history graph]

all: 0

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ubuntu

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version: 1.54.0-1

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