r-bioc-bsgenome - Debian Package Tracker

general

source: r-bioc-bsgenome (main)
version: 1.80.0+ds-1
maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD]
arch: all
std-ver: 4.7.4
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.58.0-1
oldstable: 1.66.3-1
stable: 1.74.0-2
unstable: 1.80.0+ds-1

versioned links

1.58.0-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.66.3-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.74.0-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
1.80.0+ds-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

r-bioc-bsgenome

action needed

Debci reports failed tests high

unstable: pass (log)
The tests ran in 0:00:51
Last run: 2026-05-25T05:45:38.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:00:16
Last run: 2025-11-27T12:12:58.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:01:02
Last run: 2026-07-18T11:16:04.000Z
Previous status: unknown

Created: 2025-11-27 Last update: 2026-08-12 08:02

Failed to analyze the VCS repository. Please troubleshoot and fix the issue. high

vcswatch reports that there is an error with this package's VCS, or the debian/changelog file inside it. Please check the error shown below and try to fix it. You might have to update the VCS URL in the debian/control file to point to the correct repository.

From https://salsa.debian.org/r-pkg-team/r-bioc-bsgenome - [deleted] (none) -> refs/pipelines/1147668 Auto packing the repository in background for optimum performance. See 'git help gc' for manual housekeeping. fatal: shallow file has changed since we read it

Created: 2026-08-11 Last update: 2026-08-11 21:30

lintian reports 1 warning normal

Lintian reports 1 warning about this package. You should make the package lintian clean getting rid of them.

Created: 2026-08-12 Last update: 2026-08-12 02:32

debian/patches: 1 patch to forward upstream low

Among the 1 debian patch available in version 1.80.0+ds-1 of the package, we noticed the following issues:

1 patch where the metadata indicates that the patch has not yet been forwarded upstream. You should either forward the patch upstream or update the metadata to document its real status.

Created: 2023-02-26 Last update: 2026-08-12 07:30

testing migrations

This package is part of the ongoing testing transition known as r-api-bioc-3.23. Please avoid uploads unrelated to this transition, they would likely delay it and require supplementary work from the release managers. On the other hand, if your package has problems preventing it to migrate to testing, please fix them as soon as possible. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
excuses:
- Migrates after: r-bioc-biocgenerics, r-bioc-biocio, r-bioc-biostrings, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-iranges, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-s4vectors, r-bioc-seqinfo, r-bioc-xvector
- Migration status for r-bioc-bsgenome (- to 1.80.0+ds-1): BLOCKED: Rejected/violates migration policy/introduces a regression
- Issues preventing migration:
- ∙ ∙ r-bioc-bsgenome/arm64 has unsatisfiable dependency
- ∙ ∙ New but not reproduced on amd64 - info: r-bioc-bsgenome
- ∙ ∙ New but not reproduced on arm64 - info: r-bioc-bsgenome
- ∙ ∙ New but not reproduced on armhf - info: r-bioc-bsgenome
- ∙ ∙ New but not reproduced on i386 - info: r-bioc-bsgenome
- ∙ ∙ Not built on buildd: arch all binaries uploaded by moeller, a new source-only upload is needed to allow migration
- ∙ ∙ Autopkgtest for r-bioc-bsgenome: amd64: Test triggered
- ∙ ∙ Too young, only 0 of 5 days old
- ∙ ∙ Build-Depends(-Arch): r-bioc-bsgenome r-bioc-biocgenerics (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-bsgenome r-bioc-biocio (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-bsgenome r-bioc-biostrings (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-bsgenome r-bioc-genomeinfodb (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-bsgenome r-bioc-genomicranges (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-bsgenome r-bioc-iranges (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-bsgenome r-bioc-rsamtools (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-bsgenome r-bioc-rtracklayer (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-bsgenome r-bioc-s4vectors
- ∙ ∙ Build-Depends(-Arch): r-bioc-bsgenome r-bioc-seqinfo (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-bsgenome r-bioc-xvector (not considered)
- ∙ ∙ Depends: r-bioc-bsgenome r-bioc-biocgenerics (not considered)
- ∙ ∙ Depends: r-bioc-bsgenome r-bioc-biocio (not considered)
- ∙ ∙ Depends: r-bioc-bsgenome r-bioc-biostrings (not considered)
- ∙ ∙ Depends: r-bioc-bsgenome r-bioc-genomicranges (not considered)
- ∙ ∙ Depends: r-bioc-bsgenome r-bioc-iranges (not considered)
- ∙ ∙ Depends: r-bioc-bsgenome r-bioc-rsamtools (not considered)
- ∙ ∙ Depends: r-bioc-bsgenome r-bioc-rtracklayer (not considered)
- ∙ ∙ Depends: r-bioc-bsgenome r-bioc-s4vectors
- ∙ ∙ Depends: r-bioc-bsgenome r-bioc-seqinfo (not considered)
- ∙ ∙ Depends: r-bioc-bsgenome r-bioc-xvector (not considered)
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-bsgenome.html
- ∙ ∙ Autopkgtest skipped on arm64: not installable
- ∙ ∙ Autopkgtest skipped on armhf: not installable (which is allowed)
- ∙ ∙ Autopkgtest skipped on i386: not installable (which is allowed)
- ∙ ∙ Autopkgtest skipped on ppc64el: not installable (which is allowed)
- ∙ ∙ Autopkgtest skipped on s390x: not installable (which is allowed)
- Not considered

news

[rss feed]

[2026-08-11] Accepted r-bioc-bsgenome 1.80.0+ds-1 (source all) into unstable (Steffen Moeller)
[2026-03-15] Accepted r-bioc-bsgenome 1.74.0-3 (source) into unstable (Charles Plessy)
[2025-11-24] r-bioc-bsgenome REMOVED from testing (Debian testing watch)
[2025-01-22] r-bioc-bsgenome 1.74.0-2 MIGRATED to testing (Debian testing watch)
[2025-01-21] r-bioc-bsgenome REMOVED from testing (Debian testing watch)
[2025-01-13] Accepted r-bioc-bsgenome 1.74.0-2 (source) into unstable (Michael R. Crusoe)
[2024-11-29] Accepted r-bioc-bsgenome 1.74.0-1 (source) into experimental (Michael R. Crusoe)
[2024-09-10] r-bioc-bsgenome 1.72.0-1 MIGRATED to testing (Debian testing watch)
[2024-08-18] Accepted r-bioc-bsgenome 1.72.0-1 (source) into unstable (Michael R. Crusoe)
[2024-08-06] Accepted r-bioc-bsgenome 1.72.0-1~0exp1 (source) into experimental (Michael R. Crusoe)
[2024-07-14] Accepted r-bioc-bsgenome 1.72.0-1~0exp (source) into experimental (Michael R. Crusoe)
[2024-06-25] r-bioc-bsgenome REMOVED from testing (Debian testing watch)
[2024-04-26] r-bioc-bsgenome 1.70.2-1 MIGRATED to testing (Debian testing watch)
[2024-03-22] r-bioc-bsgenome REMOVED from testing (Debian testing watch)
[2024-02-15] r-bioc-bsgenome 1.70.2-1 MIGRATED to testing (Debian testing watch)
[2024-02-13] Accepted r-bioc-bsgenome 1.70.2-1 (source) into unstable (Andreas Tille)
[2023-12-17] r-bioc-bsgenome 1.70.1-1 MIGRATED to testing (Debian testing watch)
[2023-11-30] Accepted r-bioc-bsgenome 1.70.1-1 (source) into unstable (Andreas Tille)
[2023-10-14] r-bioc-bsgenome 1.68.0-1 MIGRATED to testing (Debian testing watch)
[2023-07-27] Accepted r-bioc-bsgenome 1.68.0-1 (source) into unstable (Andreas Tille)
[2023-07-14] r-bioc-bsgenome REMOVED from testing (Debian testing watch)
[2023-03-06] r-bioc-bsgenome 1.66.3-1 MIGRATED to testing (Debian testing watch)
[2023-02-24] Accepted r-bioc-bsgenome 1.66.3-1 (source) into unstable (Andreas Tille)
[2023-01-16] r-bioc-bsgenome 1.66.2-1 MIGRATED to testing (Debian testing watch)
[2023-01-09] Accepted r-bioc-bsgenome 1.66.2-1 (source) into unstable (Andreas Tille)
[2022-12-06] r-bioc-bsgenome 1.66.1-1 MIGRATED to testing (Debian testing watch)
[2022-12-06] r-bioc-bsgenome 1.66.1-1 MIGRATED to testing (Debian testing watch)
[2022-12-05] r-bioc-bsgenome REMOVED from testing (Debian testing watch)
[2022-12-05] r-bioc-bsgenome REMOVED from testing (Debian testing watch)
[2022-11-21] Accepted r-bioc-bsgenome 1.66.1-1 (source) into unstable (Andreas Tille)

bugs [bug history graph]

all: 0

links

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ubuntu

[Information about Ubuntu for Debian Developers]

version: 1.74.0-3