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r-bioc-purecn

Copy number calling and SNV classification using targeted short read sequencing

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general

source: r-bioc-purecn (main)
version: 2.18.0+dfsg-1
maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
uploaders: Andreas Tille [DMD]
arch: all
std-ver: 4.7.4
VCS: Git (Browse, QA)

versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]

[pool directory]

o-o-stable: 1.20.0+dfsg-3
oldstable: 2.4.0+dfsg-1
stable: 2.12.0+dfsg-2
unstable: 2.18.0+dfsg-1

versioned links

1.20.0+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.4.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.12.0+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
2.18.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]

binaries

r-bioc-purecn

action needed

Debci reports failed tests high

unstable: fail (log)
The tests ran in 0:02:38
Last run: 2026-05-28T18:25:53.000Z
Previous status: unknown

testing: fail (log)
The tests ran in 0:00:22
Last run: 2025-11-27T17:08:21.000Z
Previous status: unknown

stable: pass (log)
The tests ran in 0:03:08
Last run: 2026-07-16T14:20:54.000Z
Previous status: unknown

Created: 2025-11-27 Last update: 2026-09-18 11:02

Failed to analyze the VCS repository. Please troubleshoot and fix the issue. high

vcswatch reports that there is an error with this package's VCS, or the debian/changelog file inside it. Please check the error shown below and try to fix it. You might have to update the VCS URL in the debian/control file to point to the correct repository.

Auto packing the repository in background for optimum performance. See 'git help gc' for manual housekeeping. fatal: shallow file has changed since we read it

Created: 2026-09-16 Last update: 2026-09-16 10:20

testing migrations

This package is part of the ongoing testing transition known as r-api-bioc-3.23. Please avoid uploads unrelated to this transition, they would likely delay it and require supplementary work from the release managers. On the other hand, if your package has problems preventing it to migrate to testing, please fix them as soon as possible. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
excuses:
- Migration status: Blocked. Can't migrate due to a non-migratable dependency. Check status below.
- Blocked by: r-bioc-summarizedexperiment
- Migrates after: r-bioc-biobase, r-bioc-biocgenerics, r-bioc-biostrings, r-bioc-dnacopy, r-bioc-genomeinfodb, r-bioc-genomicfeatures, r-bioc-genomicranges, r-bioc-iranges, r-bioc-rhdf5, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-s4vectors, r-bioc-seqinfo, r-bioc-variantannotation
- Migration status for r-bioc-purecn (- to 2.18.0+dfsg-1): BLOCKED: Cannot migrate due to another item, which is blocked (please check which dependencies are stuck)
- Issues preventing migration:
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-summarizedexperiment (not considered)
- ∙ ∙ Depends: r-bioc-purecn r-bioc-summarizedexperiment (not considered)
- ∙ ∙ Invalidated by build-dependency
- ∙ ∙ Invalidated by dependency
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-biobase
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-biocgenerics (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-biostrings
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-dnacopy
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-genomeinfodb (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-genomicfeatures
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-genomicranges
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-iranges (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-rhdf5
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-rsamtools (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-rtracklayer (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-s4vectors (not considered)
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-seqinfo
- ∙ ∙ Build-Depends(-Arch): r-bioc-purecn r-bioc-variantannotation
- ∙ ∙ Depends: r-bioc-purecn r-bioc-biobase
- ∙ ∙ Depends: r-bioc-purecn r-bioc-biocgenerics (not considered)
- ∙ ∙ Depends: r-bioc-purecn r-bioc-biostrings
- ∙ ∙ Depends: r-bioc-purecn r-bioc-dnacopy
- ∙ ∙ Depends: r-bioc-purecn r-bioc-genomeinfodb (not considered)
- ∙ ∙ Depends: r-bioc-purecn r-bioc-genomicfeatures
- ∙ ∙ Depends: r-bioc-purecn r-bioc-genomicranges
- ∙ ∙ Depends: r-bioc-purecn r-bioc-iranges (not considered)
- ∙ ∙ Depends: r-bioc-purecn r-bioc-rhdf5
- ∙ ∙ Depends: r-bioc-purecn r-bioc-rsamtools (not considered)
- ∙ ∙ Depends: r-bioc-purecn r-bioc-rtracklayer (not considered)
- ∙ ∙ Depends: r-bioc-purecn r-bioc-s4vectors (not considered)
- ∙ ∙ Depends: r-bioc-purecn r-bioc-seqinfo
- ∙ ∙ Depends: r-bioc-purecn r-bioc-variantannotation
- Additional info (not blocking):
- ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-purecn.html
- ∙ ∙ Autopkgtest skipped on armhf: not installable (which is allowed)
- ∙ ∙ Autopkgtest skipped on i386: not installable (which is allowed)
- ∙ ∙ Autopkgtest for r-bioc-purecn/2.18.0+dfsg-1: amd64: Pass, arm64: Pass, ppc64el: Pass, riscv64: Pass
- ∙ ∙ Reproduced on amd64 - info
- ∙ ∙ Reproduced on arm64 - info
- ∙ ∙ Reproduced on armhf - info
- ∙ ∙ Reproduced on i386 - info
- ∙ ∙ Required age reduced by 3 days because of autopkgtest
- ∙ ∙ 2 days old (needed 2 days)
- Not considered

news

[2026-09-16] Accepted r-bioc-purecn 2.18.0+dfsg-1 (source) into unstable (Charles Plessy)
[2026-03-15] Accepted r-bioc-purecn 2.12.0+dfsg-3 (source) into unstable (Charles Plessy)
[2025-11-24] r-bioc-purecn REMOVED from testing (Debian testing watch)
[2025-01-22] r-bioc-purecn 2.12.0+dfsg-2 MIGRATED to testing (Debian testing watch)
[2025-01-14] Accepted r-bioc-purecn 2.12.0+dfsg-2 (source) into unstable (Michael R. Crusoe)
[2025-01-02] r-bioc-purecn REMOVED from testing (Debian testing watch)
[2024-11-30] Accepted r-bioc-purecn 2.12.0+dfsg-1 (source) into experimental (Michael R. Crusoe)
[2024-10-04] r-bioc-purecn 2.10.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2024-08-18] Accepted r-bioc-purecn 2.10.0+dfsg-1 (source) into unstable (Michael R. Crusoe)
[2024-07-22] Accepted r-bioc-purecn 2.10.0+dfsg-1~0exp1 (source) into experimental (Michael R. Crusoe)
[2024-07-14] Accepted r-bioc-purecn 2.10.0+dfsg-1~0exp (source) into experimental (Michael R. Crusoe)
[2024-06-25] r-bioc-purecn REMOVED from testing (Debian testing watch)
[2024-04-26] r-bioc-purecn 2.8.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2024-03-22] r-bioc-purecn REMOVED from testing (Debian testing watch)
[2023-12-17] r-bioc-purecn 2.8.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-12-01] Accepted r-bioc-purecn 2.8.1+dfsg-1 (source) into unstable (Andreas Tille)
[2023-10-14] r-bioc-purecn 2.6.4+dfsg-1 MIGRATED to testing (Debian testing watch)
[2023-07-27] Accepted r-bioc-purecn 2.6.4+dfsg-1 (source) into unstable (Andreas Tille)
[2023-07-14] r-bioc-purecn REMOVED from testing (Debian testing watch)
[2022-12-06] r-bioc-purecn 2.4.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-12-05] r-bioc-purecn REMOVED from testing (Debian testing watch)
[2022-11-22] Accepted r-bioc-purecn 2.4.0+dfsg-1 (source) into unstable (Andreas Tille)
[2022-05-24] r-bioc-purecn 2.2.0+dfsg-1 MIGRATED to testing (Debian testing watch)
[2022-05-17] Accepted r-bioc-purecn 2.2.0+dfsg-1 (source) into unstable (Andreas Tille)
[2022-03-11] r-bioc-purecn 2.0.2+dfsg-2 MIGRATED to testing (Debian testing watch)
[2022-03-08] Accepted r-bioc-purecn 2.0.2+dfsg-2 (source) into unstable (Andreas Tille)
[2022-03-08] Accepted r-bioc-purecn 2.0.2+dfsg-1 (source) into unstable (Andreas Tille)
[2021-12-03] r-bioc-purecn 2.0.1+dfsg-1 MIGRATED to testing (Debian testing watch)
[2021-11-26] Accepted r-bioc-purecn 2.0.1+dfsg-1 (source) into unstable (Andreas Tille)
[2021-09-29] r-bioc-purecn 1.22.2+dfsg-1 MIGRATED to testing (Debian testing watch)

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bugs [bug history graph]

all: 0

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