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r-bioc-gviz

Plotting data and annotation information along genomic coordinates

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general
  • source: r-bioc-gviz (main)
  • version: 1.50.0+dfsg-3
  • maintainer: Debian R Packages Maintainers (archive) (DMD) (LowNMU)
  • uploaders: Andreas Tille [DMD]
  • arch: all
  • std-ver: 4.7.3
  • VCS: Git (Browse, QA)
versions [more versions can be listed by madison] [old versions available from snapshot.debian.org]
[pool directory]
  • o-o-stable: 1.34.0+dfsg-1
  • oldstable: 1.42.1+dfsg-1
  • stable: 1.50.0+dfsg-2
  • unstable: 1.50.0+dfsg-3
versioned links
  • 1.34.0+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.42.1+dfsg-1: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.50.0+dfsg-2: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
  • 1.50.0+dfsg-3: [.dsc, use dget on this link to retrieve source package] [changelog] [copyright] [rules] [control]
binaries
  • r-bioc-gviz
action needed
Debci reports failed tests high
  • unstable: pass (log)
    The tests ran in 0:01:54
    Last run: 2026-04-19T15:10:09.000Z
    Previous status: unknown

  • testing: fail (log)
    The tests ran in 0:00:20
    Last run: 2025-11-27T15:31:40.000Z
    Previous status: unknown

  • stable: pass (log)
    The tests ran in 0:01:54
    Last run: 2025-11-09T04:03:45.000Z
    Previous status: unknown

Created: 2025-11-27 Last update: 2026-05-17 00:31
A new upstream version is available: 1.56.0 high
A new upstream version 1.56.0 is available, you should consider packaging it.
Created: 2025-11-27 Last update: 2026-05-16 22:49
debian/patches: 1 patch with invalid metadata high

Among the 1 debian patch available in version 1.50.0+dfsg-3 of the package, we noticed the following issues:

  • 1 patch with invalid metadata that ought to be fixed.
Created: 2023-02-26 Last update: 2026-03-15 19:02
The package has not entered testing even though the delay is over normal
The package has not entered testing even though the 5-day delay is over. Check why.
Created: 2026-04-13 Last update: 2026-05-17 01:33
Standards version of the package is outdated. wishlist
The package should be updated to follow the last version of Debian Policy (Standards-Version 4.7.4 instead of 4.7.3).
Created: 2026-03-31 Last update: 2026-03-31 15:01
testing migrations
  • This package will soon be part of the r-api-bioc-3.23 transition. You might want to ensure that your package is ready for it. You can probably find supplementary information in the debian-release archives or in the corresponding release.debian.org bug.
  • excuses:
    • Migrates after: r-bioc-annotationdbi, r-bioc-biobase, r-bioc-biocgenerics, r-bioc-biomart, r-bioc-biostrings, r-bioc-biovizbase, r-bioc-bsgenome, r-bioc-ensembldb, r-bioc-genomeinfodb, r-bioc-genomicalignments, r-bioc-genomicfeatures, r-bioc-genomicranges, r-bioc-iranges, r-bioc-rsamtools, r-bioc-rtracklayer, r-bioc-s4vectors, r-bioc-xvector
    • Migration status for r-bioc-gviz (- to 1.50.0+dfsg-3): Waiting for test results or another package, or too young (no action required now - check later)
    • Issues preventing migration:
    • ∙ ∙ Autopkgtest for gffread/0.12.7-8: amd64: Failed (not a regression) ♻ (reference ♻), arm64: Failed (not a regression) ♻ (reference ♻), loong64: Reference test triggered, but real test failed already ♻, ppc64el: Failed (not a regression) ♻ (reference ♻), riscv64: Failed (not a regression) ♻ (reference ♻)
    • ∙ ∙ Autopkgtest for r-bioc-gviz/1.50.0+dfsg-3: amd64: Pass, arm64: Pass, loong64: Test triggered, ppc64el: Pass, riscv64: Pass
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-annotationdbi
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-biobase
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-biocgenerics (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-biomart (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-biostrings (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-biovizbase
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-bsgenome
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-ensembldb
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-genomeinfodb (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-genomicalignments
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-genomicfeatures
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-genomicranges
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-iranges (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-rsamtools (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-rtracklayer (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-s4vectors (not considered)
    • ∙ ∙ Build-Depends(-Arch): r-bioc-gviz r-bioc-xvector
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-annotationdbi
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-biobase
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-biocgenerics (not considered)
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-biomart (not considered)
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-biostrings (not considered)
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-biovizbase
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-bsgenome
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-ensembldb
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-genomeinfodb (not considered)
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-genomicalignments
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-genomicfeatures
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-genomicranges
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-iranges (not considered)
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-rsamtools (not considered)
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-rtracklayer (not considered)
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-s4vectors (not considered)
    • ∙ ∙ Depends: r-bioc-gviz r-bioc-xvector
    • Additional info (not blocking):
    • ∙ ∙ Piuparts tested OK - https://piuparts.debian.org/sid/source/r/r-bioc-gviz.html
    • ∙ ∙ Autopkgtest skipped on i386: not installable (which is allowed)
    • ∙ ∙ Autopkgtest skipped on s390x: not installable (which is allowed)
    • ∙ ∙ Reproduced on amd64 - info
    • ∙ ∙ Reproduced on arm64 - info
    • ∙ ∙ Reproduced on armhf - info
    • ∙ ∙ Reproduced on i386 - info
    • ∙ ∙ 63 days old (needed 5 days)
    • Not considered
news
[rss feed]
  • [2026-03-15] Accepted r-bioc-gviz 1.50.0+dfsg-3 (source) into unstable (Charles Plessy)
  • [2025-11-24] r-bioc-gviz REMOVED from testing (Debian testing watch)
  • [2025-01-22] r-bioc-gviz 1.50.0+dfsg-2 MIGRATED to testing (Debian testing watch)
  • [2025-01-21] r-bioc-gviz REMOVED from testing (Debian testing watch)
  • [2025-01-14] Accepted r-bioc-gviz 1.50.0+dfsg-2 (source) into unstable (Michael R. Crusoe)
  • [2024-12-08] r-bioc-gviz 1.48.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2024-12-07] r-bioc-gviz REMOVED from testing (Debian testing watch)
  • [2024-12-03] Accepted r-bioc-gviz 1.50.0+dfsg-1 (source) into experimental (Michael R. Crusoe)
  • [2024-09-10] r-bioc-gviz 1.48.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2024-08-18] Accepted r-bioc-gviz 1.48.0+dfsg-1 (source) into unstable (Michael R. Crusoe)
  • [2024-08-07] Accepted r-bioc-gviz 1.48.0+dfsg-1~0exp1 (source) into experimental (Michael R. Crusoe)
  • [2024-07-14] Accepted r-bioc-gviz 1.48.0+dfsg-1~0exp (source) into experimental (Michael R. Crusoe)
  • [2024-06-25] r-bioc-gviz REMOVED from testing (Debian testing watch)
  • [2024-04-26] r-bioc-gviz 1.46.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2024-03-22] r-bioc-gviz REMOVED from testing (Debian testing watch)
  • [2023-12-17] r-bioc-gviz 1.46.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2023-12-08] Accepted r-bioc-gviz 1.46.1+dfsg-1 (source) into unstable (Andreas Tille)
  • [2023-10-14] r-bioc-gviz 1.44.2+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2023-10-09] Accepted r-bioc-gviz 1.44.2+dfsg-1 (source) into unstable (Andreas Tille)
  • [2023-08-18] Accepted r-bioc-gviz 1.44.1+dfsg-1 (source) into unstable (Andreas Tille)
  • [2023-07-27] Accepted r-bioc-gviz 1.44.0+dfsg-1 (source) into unstable (Andreas Tille)
  • [2023-07-14] r-bioc-gviz REMOVED from testing (Debian testing watch)
  • [2023-03-08] r-bioc-gviz 1.42.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2023-02-26] Accepted r-bioc-gviz 1.42.1+dfsg-1 (source) into unstable (Andreas Tille)
  • [2022-12-06] r-bioc-gviz 1.42.0+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-12-05] r-bioc-gviz REMOVED from testing (Debian testing watch)
  • [2022-11-22] Accepted r-bioc-gviz 1.42.0+dfsg-1 (source) into unstable (Andreas Tille)
  • [2022-05-24] r-bioc-gviz 1.40.1+dfsg-1 MIGRATED to testing (Debian testing watch)
  • [2022-05-17] Accepted r-bioc-gviz 1.40.1+dfsg-1 (source) into unstable (Andreas Tille)
  • [2022-02-02] r-bioc-gviz 1.38.3+dfsg-1 MIGRATED to testing (Debian testing watch)
  • 1
  • 2
bugs [bug history graph]
  • all: 0
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  • version: 1.50.0+dfsg-2

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