Debian Med

Packages with test failures (161) [hide table]
Package VCS Archive Bugs Tests Upstream
bart-cuda
(Git) action needed
0.8.00-2 3 (2 RC) fail | pass | fail 1.0.00
bcbio 1.2.9-2 0 fail | neutral | fail 1.2.9
bio-tradis 1.4.5+dfsg2-2 0 pass | fail 1.4.5
bioperl-run 1.7.3-14 0 pass | fail | fail 1-7-3
busco 6.0.0-1 0 pass | tmpfail | fail 6.1.0
camitk 6.0.0-6 0 pass | fail | fail 6.0.0
canu
2.3+dfsg-1 (Git) action needed
2.2+dfsg-5 0 fail 2.3
circlator 1.5.6-14 0 fail | pass | pass 1.5.5-docker5
cluster3 1.59+ds-5 0 fail | pass | fail 1.59
cutesv 2.1.1-1 1 neutral | fail | neutral 2.1.4
dcmstack 0.9+git20260610.ed4d27c-2 0 pass | tmpfail | fail 0.9
dicomnifti 2.33.1-5 0 fail | pass | pass 2.33.1
drmaa 0.7.9-3 0 fail | neutral | neutral 0.7.9
emboss-explorer
2.2.0-13 (Git) action needed
2.2.0-12 0 fail 2.2.0
emperor 1.0.5+ds1-2 1 pass | pass | fail 1.0.5
epigrass 3.0.0+dfsg-1 0 fail
freebayes
1.3.9-2 (Git) action needed
1.3.9-2 1 pass | pass | fail 1.3.10
gatb-core
1.4.2+dfsg-15 (Git) action needed
1.4.2+dfsg-14 2 pass | pass | fail 1.4.2
gemma 0.98.5+dfsg-3 0 pass | fail | pass 0.98.5
genomicsdb 1.5.5-3 0 fail | tmpfail | pass 1.5.5
gffread 0.12.7-8 0 pass | fail | fail 0.12.9
ggd-utils 1.0.0+ds-3 0 fail | tmpfail | pass 1.0.0
hilive 2.0a-6 0 fail | pass | pass 2.0a
hts-nim-tools
0.2.1-4 (Git) action needed
0.2.1-4 0 fail | tmpfail | pass 0.2.1
idseq-bench 0.0~git20210602.27fb6dc-2 0 fail | tmpfail | pass
intake 0.6.6-1 0 fail | pass | fail 2.0.8
invesalius 3.1.99998-8 2 (1 RC) neutral | neutral | fail 3.1.99998
kallisto 0.51.1+dfsg-2 1 (1 RC) pass | fail | pass 0.52.0
khmer
3.0.0~a3+dfsg-8 (Git) action needed
3.0.0~a3+dfsg-9~0exp 0 fail | fail | pass 3.0.0~a3
kineticstools 0.6.1+git20220223.1326a4d+dfsg-7 0 pass | fail | pass 0.6.1+git20220223.1326a4d
lambda-align 1.0.3-9 0 pass | fail | pass 1.0.3
lefse
1.1.2-3 (Git) action needed
1.1.2-3 0 pass | fail | fail 1.1.2
libatomic-queue 1.9.4-1 0 fail | tmpfail | pass 1.9.4
libchado-perl 1.31-9 1 fail 1.31
libsis-jhdf5-java 19.04.1+dfsg-3 0 fail | fail | fail
logol 1.7.9+dfsg-6 0 fail | pass | pass 1.7.9
mapsembler2 2.2.4+dfsg1-7 1 pass | fail | fail 2.2.4
mindthegap
2.3.0-4 (Git) action needed
2.3.0-5 0 fail | pass | pass 2.3.0
mosdepth 0.3.11+ds-3 0 fail | pass | pass 0.3.14
nanook 1.33+dfsg-6 0 fail | pass | fail 1.33
nanostat
1.4.0-4 (Git) action needed
1.4.0-4 1 fail | tmpfail | pass 1.4.0
ncbi-entrez-direct 24.0.20250523+dfsg-3 0 pass | fail | pass 26.4.20261008
nim-hts 0.3.25+ds-3 1 fail | pass | pass 0.3.32
nim-kexpr
0.0.2-4 (Git) action needed
0.0.2-4 0 fail | tmpfail | pass 0.0.2
nim-lapper 0.1.8-1 0 fail | tmpfail | pass 0.1.8
nipype 1.10.0-2 0 pass | pass | fail 1.12.0
ont-fast5-api 4.1.3+dfsg-5 1 (1 RC) pass | pass | fail 4.1.3
pbsuite 15.8.24+dfsg-8 1 (1 RC) fail | fail | fail 15.8.24
pizzly 0.37.3+ds-12 0 pass | fail | fail 0.37.3
psychopy
2026.2.0+dfsg-1 (Git) action needed
2026.2.0+dfsg-1 3 (1 RC) pass | pass | fail 2026.2.4
pychopper 2.7.10-5 0 fail | tmpfail | neutral 2.7.10
pysurfer
0.11.2-2 (Git) action needed
0.11.2-2 0 fail | pass | pass 0.11.2
python-alignlib 0.1.1+dfsg-2 0 neutral | fail | neutral 0.1.1
python-anndata 0.13.4-2 0 fail | pass | pass 0.13.4
python-cobra 0.31.1-1 1 fail | tmpfail | pass 0.32.1
python-cogent 2026.6.2a0+dfsg-3 1 (1 RC) fail | pass | fail 2026.9.10
python-cooler 0.10.3-1 0 pass | fail | pass 0.10.4
python-duckpy 3.2.0-3 0 fail | pass | fail 3.2.0
python-etelemetry 0.3.1-2 0 fail | tmpfail | pass 0.3.1
python-pbcommand 2.1.1+git20231020.28d1635-2 0 pass | fail | pass 2.1.1+git20231020.28d1635
python-pbcore 2.1.2+dfsg-14 1 (1 RC) pass | pass | fail 2.6.0
python-pyflow 1.1.20-4 0 fail | neutral | fail 1.1.20
python-pynndescent 0.6.0-2 0 fail | fail | pass 0.6.0
python-rdflib-jsonld 0.6.1-2 0 fail | neutral | neutral 0.6.2
python-sqlsoup 0.9.1-5 0 neutral | neutral | fail 0.9.1
python-streamz 0.6.5-2 0 pass | fail | pass 0.6.6
python3-typed-ast 1.5.4-1 0 fail | neutral | neutral 1.5.5
q2-alignment
2024.5.0-1 (Git) action needed
2024.5.0-1 1 (1 RC) fail | fail | fail 2026.7.0
q2-cutadapt
2024.5.0-2 (Git) action needed
2024.5.0-1 1 fail | fail | fail 2026.7.0
q2-dada2 2024.5.0-1 0 fail | fail | fail 2026.7.0
q2-demux
2024.5.0+dfsg-1 (Git) action needed
2024.5.0+dfsg-1 2 (1 RC) fail | fail | fail 2026.7.0
q2-diversity-lib
2024.5.0-1 (Git) action needed
2024.5.0-1 0 fail | fail | fail 2026.7.0
q2-emperor
2024.5.0-2 (Git) action needed
2024.5.0-2 0 fail | pass | pass 2026.7.0
q2-feature-classifier 2024.5.0-1 0 fail | pass | fail 2026.7.0
q2-feature-table
2024.5.0+dfsg-1 (Git) action needed
2024.5.0+dfsg-1 0 fail | fail | fail 2026.7.0
q2-fragment-insertion
2024.5.0-1 (Git) action needed
2024.5.0-1 0 fail | fail | fail 2026.7.0
q2-metadata 2024.5.0+dfsg-1 0 fail | pass | pass 2026.7.0
q2-phylogeny
2024.5.0-1 (Git) action needed
2024.5.0-1 2 (1 RC) fail | fail | fail 2026.7.0
q2-quality-control 2024.5.0-2 0 fail | fail | fail 2026.7.0
q2-quality-filter 2024.5.0-1 0 fail | fail | fail 2026.7.0
q2-sample-classifier
2024.5.0-2 (Git) action needed
2024.5.0-2 0 fail | fail | fail 2026.7.0
q2-taxa 2024.5.0+dfsg-1 0 fail | pass | pass 2026.7.0
q2-types
2024.5.0-1 (Git) action needed
2024.5.0-1 3 (1 RC) fail | fail | fail 2026.7.0
q2cli
2025.10.1-1 (Git) action needed
2024.5.0-2 1 (1 RC) fail | fail | neutral 2026.7.0
qiime
2025.10.1-1 (Git) action needed
2024.5.0-1 2 fail | fail | fail 2026.7.0
qtltools 1.3.1+dfsg-6 0 pass | pass | fail 1.3.1
r-bioc-altcdfenvs 1:2.74.0-1 0 pass | fail | pass 2.74.0
r-bioc-annotate 1.90.0+dfsg-1 0 pass | fail | pass 1.90.0
r-bioc-annotationdbi 1.74.0-1 0 pass | fail | pass 1.74.0
r-bioc-annotationfilter 1.36.0+dfsg-1 0 pass | fail | pass 1.36.0
r-bioc-annotationhub 4.2.2+dfsg-1 0 pass | fail | pass 4.2.2
r-bioc-biocparallel 1.46.0-1 1 (1 RC) pass | fail | pass 1.46.0
r-bioc-biomart 2.68.0+dfsg-1 0 fail | fail | fail 2.68.0
r-bioc-biomformat 1.40.0+dfsg-1 0 pass | pass | fail 1.40.0
r-bioc-biostrings 2.80.2+dfsg-1 0 pass | fail | pass 2.80.2
r-bioc-biovizbase 1.60.0+ds-1 0 pass | fail | pass 1.60.0
r-bioc-bsgenome 1.80.0+ds-1 0 pass | fail | pass 1.80.0
r-bioc-cummerbund 2.48.0-2 0 pass | fail | pass
r-bioc-delayedarray 0.38.2+dfsg-1 0 pass | fail | pass 0.38.2
r-bioc-deseq2 1.52.0+dfsg-1 0 pass | fail | fail 1.52.0
r-bioc-edger 4.10.5+dfsg-1 0 pass | fail | pass 4.10.5
r-bioc-ensembldb
2.36.1+dfsg-2 (Git) action needed
2.36.1+dfsg-1 0 pass | fail | pass 2.36.1
r-bioc-genefilter
1.94.0-2 (Git) action needed
1.94.0-2 0 pass | fail | pass 1.94.0
r-bioc-geneplotter 1.90.0+dfsg-1 0 pass | fail | pass 1.90.0
r-bioc-genomeinfodb 1.48.0+dfsg-1 0 fail | fail | pass 1.48.0
r-bioc-genomicalignments 1.48.0+dfsg-1 0 pass | fail | pass 1.48.0
r-bioc-genomicfeatures 1.64.0+dfsg-2 0 pass | fail | pass 1.64.0
r-bioc-genomicranges 1.64.0+dfsg-1 0 pass | fail | pass 1.64.0
r-bioc-go.db 3.23.1-1.1 0 pass | fail | pass 3.23.1
r-bioc-gviz 1.56.0+dfsg-1 0 pass | fail | pass 1.56.0
r-bioc-iranges 2.46.0-1 0 pass | fail | fail 2.46.0
r-bioc-limma 3.68.5+dfsg-1 0 pass | fail | pass 3.68.5
r-bioc-phyloseq
1.56.0+dfsg-1 (Git) action needed
1.56.0+dfsg-1 0 pass | fail | neutral 1.56.0
r-bioc-rsamtools 2.28.0+dfsg-1 0 pass | fail | pass 2.28.0
r-bioc-rtracklayer 1.72.0+ds-1 0 pass | fail | pass 1.72.0
r-bioc-shortread
1.70.0+ds-1.1 (Git) action needed
1.70.0+ds-1 0 pass | fail | pass 1.70.0
r-bioc-summarizedexperiment 1.42.0+dfsg-1 0 pass | fail | pass 1.42.0
r-bioc-variantannotation 1.58.0+ds-1 0 pass | fail | pass 1.58.0
r-bioc-xvector 0.52.0-1 0 pass | fail | pass 0.52.0
r-cran-ape 5.8-1-2 0 pass | fail | pass 5.8-1
r-cran-bbmle 1.0.26-1 1 pass | fail | pass 1.0.26
r-cran-bio3d 2.4-5-2 0 pass | fail | pass 2.4-5
r-cran-bold 1.3.0-1 0 fail | fail | fail
r-cran-dbitest 1.8.3-1 0 pass | fail | pass 1.8.3
r-cran-dorng 1.8.6.3-1 0 pass | fail | pass 1.8.6.3
r-cran-filehash 2.4-6-3 0 fail | tmpfail | pass 2.4-6
r-cran-fitcoach 1.0-5 0 fail | pass | pass 1.0
r-cran-genabel 1.8-0-6 0 fail | pass | pass 1.8-0
r-cran-genabel.data 1.0.0-4 0 fail | pass | pass
r-cran-hexbin 1.28.6-1 0 pass | fail | pass 1.28.6
r-cran-luminescence 1.2.1-1 0 pass | fail | pass 1.3.1
r-cran-mockr 0.2.2-1 0 fail | tmpfail | pass 0.2.2
r-cran-natserv 1.0.0+dfsg-2 0 pass | fail | pass 1.0.0
r-cran-phangorn 2.12.1+dfsg-2 0 fail | fail | fail 2.12.1
r-cran-pkgmaker 0.32.10-2 0 pass | fail | pass
r-cran-raster 3.6-32-1 0 fail | pass | pass 3.6-32
r-cran-rglwidget 0.2.1-4 0 pass | fail | pass
r-cran-ritis 1.0.0-2 0 pass | pass | fail 1.0.0
r-cran-rlang 1.3.0-1 0 pass | fail | pass 1.3.0
r-cran-rmarkdown 2.31+dfsg-1 1 pass | fail | pass 2.32
r-cran-rnexml 2.4.11+ds-2 0 pass | fail | pass 2.4.11
r-cran-rniftilib 0.0-35.r79-6 0 fail | pass | pass 0.No-Site
r-cran-rredlist 1.1.1-1 0 pass | fail | pass 1.1.1
r-cran-rsqlite 2.4.6-1 0 pass | fail | pass 3.53.3
r-cran-tibble 3.3.1+dfsg-2 0 pass | fail | pass 3.3.1
r-cran-tikzdevice 0.12.6-3 0 fail | fail | pass 0.12.6
r-cran-treescape 1.10.18+dfsg-2 0 fail | pass | fail 1.10.18
r-cran-wikipedir 1.7.1-2 0 pass | fail | pass 1.7.1
r-cran-worrms
0.4.3+dfsg-2 (Git) action needed
0.4.3+dfsg-2 0 pass | pass | fail 0.4.3
readucks 0.0.3-8 0 fail | tmpfail | pass 0.0.3
relion-cuda
(Git) action needed
5.1.0+dfsg-1 0 fail | neutral | fail 5.1.1
seqan3 3.4.0+ds-3 0 pass | fail | pass 3.4.2
seqtools 4.44.1+dfsg-9 0 pass | fail | pass 4.44.1
sniffles 2.8.0-1 0 pass | pass | fail 2.8.1
spdlog 1:1.15.3+ds-1 0 pass | pass | fail 1.17.0
squizz 0.99d+dfsg-3 0 fail | fail | pass 0.99d
sra-sdk 3.4.1+dfsg-2 0 pass | fail | fail 3.4.1
trinityrnaseq 2.15.2+dfsg-3 1 pass | fail | fail 2.15.2
umap-learn 0.5.12+dfsg-1 1 fail | pass | pass 0.5.12
umis
1.0.9-2 (Git) action needed
1.0.9-2 2 (1 RC) fail | pass | pass 1.0.9
vg 1.59.0+ds-0.1 6 (2 RC) pass | pass | fail 1.77.0