Debian Med

Packages with bugs (184) [hide table]
Package VCS Archive Bugs Tests Upstream
abyss 2.3.10-2 2 (1 RC) pass | tmpfail | pass 2.3.10
altree 1.3.2-4 1 pass | tmpfail | pass 1.3.2
amide
1.1.0-1 (Git) action needed
1.1.0-0.1 1 neutral | tmpfail | neutral 1.1.0
ants 2.6.5+dfsg-1 2 2.6.5
arb
6.0.6-9 (Git) action needed
6.0.6-8 7 (2 RC)
augur
26.0.0-1 (Git) action needed
24.4.0-3 1 pass | tmpfail | pass 34.2.0
bart-cuda
(Git) action needed
0.8.00-2 3 (2 RC) fail | pass | fail 1.0.00
bart-view 0.3.00-1 1 0.3.00
bbhash 1.0.0-7 1 pass | tmpfail | pass 1.0.0
beagle 250227-2 1 pass | pass | pass 250227
beast-mcmc 1.10.4+dfsg-8 1 10.6.0-beta6
beast2-mcmc 2.7.8+dfsg-1 1 pass | pass | pass 2.7.8
berkeley-express 1.5.3+dfsg-7 1 pass | tmpfail | pass 1.5.3
biosig 3.9.5-1 1 neutral | neutral | neutral 3.9.8
blimps 3.9+ds-4 1 (1 RC)
bmtk 1.1.1+ds-5 1 pass | tmpfail | pass 1.2.0
brian 2.10.1-3 2 pass | pass | pass 2.10.1
btllib 1.7.5+dfsg-2 1 pass | pass | pass 1.7.8
camp 0.8.4-6 1 0.8.4
chromhmm 1.27+dfsg-1 1 pass | tmpfail | pass 1.28
cif-tools
2.0.0-1 (Git) action needed
2.0.0-1 1 pass | tmpfail | pass 2.0.1
connectome-workbench 2.2.1+dfsg-1 1 2.2.1
consensuscore 1.1.1+dfsg-9 1 neutral | neutral | neutral 0.No-Release
ctn 3.2.0~dfsg-10 2 3.2.0
cufflinks 2.2.1+git20190706.dc3b0cb+dfsg-1 1 2.2.1+git20190706.dc3b0cb
cutesv 2.1.1-1 1 neutral | fail | neutral 2.1.4
cwltool 3.2.20260413085819-1 1 pass | tmpfail | pass 3.3.20260925135507
cycle 0.3.3-2 5 0.3.3
datatables.js
1.11.5+dfsg-2 (Git) action needed
1.11.5+dfsg-2 1 3.1.3
dawg 1.2-5 1 neutral | tmpfail | neutral 1.2
dcmtk 3.7.0+really3.7.0-7 13 pass | tmpfail | pass 3.7.0
debian-med
3.9.1 (Git) action needed
3.9.0 3
dicom3tools 1.00~20240118131615-2 6 pass | tmpfail | pass 1.00.snapshot.20260927113651
dicomscope
3.6.0-28 (Git) action needed
3.6.0-28 1
dipy
1.12.1-5 (Git) action needed
1.12.1-5 1 (1 RC) pass | tmpfail | pass 1.12.1
ea-utils 1.1.2+dfsg-10 1 pass | tmpfail | pass 0.No-Track
emboss 6.6.0+dfsg-19 4 pass | tmpfail | pass
emperor 1.0.5+ds1-2 1 pass | pass | fail 1.0.5
f2j 0.8.1+dfsg-6 1 0.8.1
fis-gtm 7.2-000-2 1 7.1-011
freebayes
1.3.9-2 (Git) action needed
1.3.9-2 1 pass | pass | fail 1.3.10
gatb-core
1.4.2+dfsg-15 (Git) action needed
1.4.2+dfsg-14 2 pass | pass | fail 1.4.2
gdcm 3.0.24-14 4 pass | tmpfail | pass 3.2.11
gentle 1.9.5~alpha2+dfsg1-4 1 1.9.5.alpha2
getdata 0.2-4 2 0.No-Track
ghmm 0.9~rc3-12 1 (1 RC) pass | tmpfail | pass 0.9-rc3
gnumed-client 1.8.25+dfsg-1 1 neutral | tmpfail | neutral 1.8.25
gwyddion 3.11-1 1 3.12
heudiconv 1.4.0-2 1 neutral | pass | neutral 1.5.1
hinge 0.5.0-8 4 neutral 0.5.0
hisat2 2.2.1-5 1 pass | tmpfail | pass 2.2.3
hmmer
3.4+dfsg-3 (Git) action needed
3.4+dfsg-3 1 pass | pass | pass 3.4
hmmer2 2.3.2+dfsg-12 1 pass | tmpfail | pass 2.3.2
htslib 1.24-3 1 pass | pass | pass 1.24
imagej 1.54g-1 1 neutral | tmpfail | neutral
insighttoolkit5 5.4.7-1 2 5.4.7
invesalius 3.1.99998-8 2 (1 RC) neutral | neutral | fail 3.1.99998
ismrmrd 1.15.0-3 1 pass | tmpfail | pass 1.15.0
jellyfish 2.3.1-7 1 pass | tmpfail | pass 2.3.1
jellyfish1
1.1.11-11 (Git) action needed
1.1.11-11 2 pass | pass | pass 1.1.11
jmodeltest 2.1.10+dfsg-14 1 2.1.10
kallisto 0.51.1+dfsg-2 1 (1 RC) pass | fail | pass 0.52.0
kmer 0~20150903+r2013-10 2 pass | tmpfail | pass 0.No-Release
kmerresistance
2.2.0-5 (Git) action needed
2.2.0-4 1 2.2.0
libai-fann-perl
0.10-5 (Git) action needed
0.10-5 1 pass | pass | pass 0.10
libbio-db-seqfeature-perl
1.7.5-2 (Git) action needed
1.7.5-1 1 pass | pass | pass 1.7.5
libchado-perl 1.31-9 1 fail 1.31
libcifpp 10.0.3-1 1 (1 RC) pass | pass | pass 10.0.4
libdeflate 1.25-1 2 (1 RC) pass | pass | pass 1.26
libgoby-java 3.3.1+dfsg2-12 1 pass | tmpfail | pass 3.3.1
libgzstream 1.5+git20171107.9a20658-3 1 1.5+git20171107.9a20658
libmaus2 2.0.813+ds-6 4 2.0.813
libsbml
5.21.2+dfsg-2 (Git) action needed
5.21.2+dfsg-1 1 neutral | tmpfail | neutral 5.21.2
libslow5lib 1.4.0+dfsg-2 1 pass | tmpfail | pass 1.5.0
libssw
1.1-16 (Git) action needed
1.1-16 1 pass | tmpfail | pass 1.2.5
libtecla 1.6.3-5 1 1.6.3
libvbz-hdf-plugin
1.0.13-2 (Git) action needed
1.0.13-1 1 1.0.13
libzeep 7.3.2-3 1 pass | tmpfail | pass 8.4.1
libzstd 1.5.7+dfsg-4 13 pass | tmpfail | pass 1.5.7
ltrsift 1.0.2-11 3 (1 RC) 1.0.2
mapsembler2 2.2.4+dfsg1-7 1 pass | fail | fail 2.2.4
maude 3.5.1-1 1 3.5.1
mencal 3.0-6 1 pass | pass | pass 3.0
metaphlan2-data 2.6.0+ds-4 2 0.No-Track
microbegps 1.0.0-7 1 neutral | tmpfail | neutral 1.0.0
microbiomeutil 20101212+dfsg1-6 1 pass | tmpfail | pass 20101212
mlv-smile 1.47-10 1 pass | tmpfail | pass 1.47
mrtrix3
3.0.8-2 (Git) action needed
3.0.8-2 2 (1 RC) 3.0.8
multiqc 1.21+dfsg-4 1 pass | tmpfail | pass 1.35
murasaki 1.68.6-18 1 (1 RC) pass | pass | pass 1.68.6
muscle 1:5.1.0-1 1 pass | tmpfail | pass 5.3
nanostat
1.4.0-4 (Git) action needed
1.4.0-4 1 fail | tmpfail | pass 1.4.0
ncbi-blast+ 2.17.0+ds-7 5 pass | tmpfail | pass 2.17.0
ncbi-igblast
1.20.0-5 (Git) action needed
1.20.0-4 3 pass | pass | pass 1.22.0
ncbi-tools6 6.1.20170106+dfsg2-7 2 pass | tmpfail | pass 20170106
nibabel 5.4.2-5 1 pass | tmpfail | pass 5.4.2
nifticlib 3.0.1-10 2 pass | tmpfail | pass 3.0.1
nim-hts 0.3.25+ds-3 1 fail | pass | pass 0.3.32
node-shiny-server
1.5.20.1002-4 (Git) action needed
1.5.20.1002-4 1 (1 RC) 1.5.23.1030
ntcard 1.2.2+dfsg-11 1 pass | pass | pass 1.2.2
ont-fast5-api 4.1.3+dfsg-5 1 (1 RC) pass | pass | fail 4.1.3
openslide 4.0.1+dfsg-2 1 pass | pass | pass 4.0.1
openslide-python
1.4.6-4 (Git) action needed
1.4.6-3 1 neutral | tmpfail | neutral 1.4.6
orthanc 1.13.0+dfsg-1 2 pass | tmpfail | pass 1.13.0
orthanc-postgresql 5.0+dfsg-7 1 11.0
paml 4.9j+dfsg-6 1 pass | tmpfail | pass
parallel 20240222+ds-4 10 20260922
parsinsert
1.04-17 (Git) action needed
1.04-17 1 pass | tmpfail | pass 1.04
pbsuite 15.8.24+dfsg-8 1 (1 RC) fail | fail | fail 15.8.24
pigx-rnaseq 0.1.1-3 1 (1 RC) 0.1.1
pixelmed 20251203+dfsg-2 5 20260916
prime-phylo 1.0.11-14 1 pass | tmpfail | pass
probabel 0.5.0+dfsg-7 1 pass | pass | pass 0.5.0
profbval 1.0.22-8 1 pass | tmpfail | pass 0.No-Site
profphd-utils 1.0.10-7 1 pass | tmpfail | pass 0.No-Site
proteinortho 6.3.1+dfsg-1 1 pass | tmpfail | pass
psychopy
2026.2.0+dfsg-1 (Git) action needed
2026.2.0+dfsg-1 3 (1 RC) pass | pass | fail 2026.2.4
psychtoolbox-3 3.0.22.3+dfsg-4 1 3.0.22.3
pynwb 2.8.2-4 1 neutral | tmpfail | neutral 4.2.0
python-bcbio-gff 0.7.1-5 1 pass | tmpfail | pass 0.7.1
python-biopython 1.88+dfsg-2 1 pass | tmpfail | pass 188
python-bioregistry
0.11.12-4 (Git) action needed
0.11.12-4 1 (1 RC) 0.15.1
python-cobra 0.31.1-1 1 fail | tmpfail | pass 0.32.1
python-cogent 2026.6.2a0+dfsg-3 1 (1 RC) fail | pass | fail 2026.9.10
python-colormath 3.0.0-4 1 neutral | neutral | neutral 3.0.0
python-csb
1.2.5+dfsg-11 (Git) action needed
1.2.5+dfsg-10 2 pass | tmpfail | pass 1.2.5
python-hdmedians 0.14.2-6 1 pass | tmpfail | pass 0.14.2
python-hmmlearn
0.3.3-2 (Git) action needed
0.3.3-1 1 pass | tmpfail | pass 0.3.3
python-loompy 3.0.8+dfsg-1 1 pass | pass | pass 3.0.8
python-pbcore 2.1.2+dfsg-14 1 (1 RC) pass | pass | fail 2.6.0
python-pybedtools 0.12.1-1 1 (1 RC) pass | pass | pass 0.12.1
python-schema-salad 8.10.20260825112551-1 2 neutral | pass | pass 8.10.20260825112551
python-seqcluster 1.2.9+ds-8 1
q2-alignment
2024.5.0-1 (Git) action needed
2024.5.0-1 1 (1 RC) fail | fail | fail 2026.7.0
q2-cutadapt
2024.5.0-2 (Git) action needed
2024.5.0-1 1 fail | fail | fail 2026.7.0
q2-demux
2024.5.0+dfsg-1 (Git) action needed
2024.5.0+dfsg-1 2 (1 RC) fail | fail | fail 2026.7.0
q2-phylogeny
2024.5.0-1 (Git) action needed
2024.5.0-1 2 (1 RC) fail | fail | fail 2026.7.0
q2-types
2024.5.0-1 (Git) action needed
2024.5.0-1 3 (1 RC) fail | fail | fail 2026.7.0
q2cli
2025.10.1-1 (Git) action needed
2024.5.0-2 1 (1 RC) fail | fail | neutral 2026.7.0
q2templates 2024.5.0+ds-4 1 pass | tmpfail | pass 2026.7.0
qcumber 2.3.0-3 3 (1 RC) pass
qiime
2025.10.1-1 (Git) action needed
2024.5.0-1 2 fail | fail | fail 2026.7.0
qrisk2 0.1.20150729-8 1 pass | tmpfail | pass 0.No-Track
r-bioc-biocparallel 1.46.0-1 1 (1 RC) pass | fail | pass 1.46.0
r-cran-bbmle 1.0.26-1 1 pass | fail | pass 1.0.26
r-cran-curl 8.0.0+dfsg-1 1 pass | tmpfail | pass 8.0.0
r-cran-dplyr
1.2.1-2 (Git) action needed
1.2.1-2 1 pass | tmpfail | pass 1.2.1
r-cran-igraph 2.3.4-1 1 pass | pass | pass 2.3.4
r-cran-openssl 2.4.2+dfsg-1 1 pass | tmpfail | pass 2.4.2
r-cran-rcurl 1.98-1.20+dfsg-1 1 pass | tmpfail | pass 1.98-1.20
r-cran-rmarkdown 2.31+dfsg-1 1 pass | fail | pass 2.32
r-cran-shiny 1.13.0+dfsg-1 2 pass | tmpfail | pass 1.14.0
rapmap
0.15.0+dfsg-5 (Git) action needed
0.15.0+dfsg-5 2 pass | tmpfail | pass 0.15.0
routine-update 0.2.8 4
sambamba 1.0.1+dfsg-3 2 pass | pass | pass 1.0.1
sbmltoolbox 4.1.0-5.1 1
shasta 0.14.0-3 1 (1 RC) pass | tmpfail | pass 0.14.0
sift 6.2.1-2 3
sight
26.0.0-2 (Git) action needed
26.0.0-2 3 26.1.0
simde 0.8.4~rc3-5 2 pass | tmpfail | pass 0.8.4-rc3
snakemake
8.2.3-1 (Git) action needed
7.32.4-12 2 pass | pass | pass 9.27.0
sortmerna 4.3.7-3 2 neutral | tmpfail | neutral 7.0.0
spades 4.0.0+really3.15.5+dfsg-3.1 2 pass | tmpfail | pass 4.3.0
spaln 3.0.7+dfsg-1 1 pass | tmpfail | pass
t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 1 pass | tmpfail | pass
terraphast 0.1.0+dfsg-1 1 (1 RC) pass | pass | pass 0.1.0
theseus 3.3.0-15 1 pass | tmpfail | pass
tifffile 20260920-1 1 pass | pass | pass 2026.9.20
tipp
1.0+dfsg-5 (Git) action needed
1.0+dfsg-5 1 1.0
tombo 1.5.1-9 1 pass | tmpfail | pass 1.5.1
treeviewx 0.5.1+git20100823.7e4d0e9-4 1 0.5.1+git20100823.7e4d0e9
trinityrnaseq 2.15.2+dfsg-3 1 pass | fail | fail 2.15.2
uc-echo 1.12-19 1 pass | tmpfail | pass 1_12
ugene
53.1+dfsg-2 (Git) action needed
52.1+dfsg-1.1 2 53.1
umap-learn 0.5.12+dfsg-1 1 fail | pass | pass 0.5.12
umis
1.0.9-2 (Git) action needed
1.0.9-2 2 (1 RC) fail | pass | pass 1.0.9
unicycler 0.5.1+dfsg-4 1 pass | pass | pass 0.5.1
vg 1.59.0+ds-0.1 6 (2 RC) pass | pass | fail 1.77.0
virulencefinder 2.0.5-2 1 pass | tmpfail | pass 3.2.1
vt 0.57721+ds-3 1 pass | tmpfail | pass 0.57721
vtk-dicom 0.8.17-3 1 (1 RC) neutral | neutral | neutral 0.8.17
xdffileio
1.0-1 (Git) action needed
0.3-4 1 0.No-Release
xmedcon 0.26.1-gtk3+dfsg-1 2 0.26.2-gtk3
yaha 0.1.83-3 1 pass | pass | pass 0.1.83