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Debian Med

Packages with bugs (351) [hide table]
Package VCS Archive Bugs Tests Upstream
abyss
2.3.10-2 (Git) action needed
2.3.10-1 1 pass | pass | pass 2.3.10
acedb
4.9.39+dfsg.02-10 (Git) action needed
4.9.39+dfsg.02-9 1 (1 RC)
allelecount 4.3.0-3 1 pass | pass | pass 4.3.0
altree 1.3.2-4 1 pass | pass | pass 1.3.2
amide 1.0.6-6 2 neutral | neutral | neutral 1.0.6
ampliconnoise 1.29-16 1 pass | pass | pass 1.29
ants 2.5.4+dfsg-1 7 2.6.2
arb
6.0.6-8 (Git) action needed
6.0.6-8 5 (1 RC) 7.0
argh 1.3.2+ds-2 1 1.3.2
assembly-stats
1.0.1+ds-6 (Git) action needed
1.0.1+ds-6 1 pass | pass | pass 1.0.1
augur
26.0.0-1 (Git) action needed
24.4.0-3 1 pass | pass | pass 31.5.0
autodock-vina 1.2.7-1 1 pass | pass | pass 1.2.7
axe-demultiplexer 0.3.3+dfsg-4 1 pass | pass | pass 0.3.3
ball 1.5.0+git20180813.37fc53c-11.1 3 (1 RC) 1.5.0+git20220524.d85d2dd
bambamc 0.0.50-6 1 (1 RC) 0_0_50
bamtools 2.5.2+dfsg-6 1 pass | pass | pass 2.5.3
bart-cuda
(Git) action needed
0.8.00-2 2 (2 RC) fail | pass | fail 0.9.00
bbhash 1.0.0-7 1 pass | pass | pass 1.0.0
bcalm 2.2.3-5 1 pass | pass | pass 2.2.3
bcbio 1.2.9-4 1 (1 RC) fail | neutral | neutral 1.2.9
beads 1.1.22-1 2 pass | pass | pass
beagle 250227-2 1 pass | pass | pass 250227
beast-mcmc 1.10.4+dfsg-7 2 10.5.0
beast2-mcmc 2.7.6+dfsg-1 1 pass | pass | fail 2.7.8
bedtools 2.31.1+dfsg-2 2 pass | pass | pass 2.31.1
berkeley-express 1.5.3+dfsg-3 2 pass | pass | pass 1.5.3
bifrost 1.3.1-1 2 (1 RC) pass | pass | pass 1.3.5
biomaj3-download 3.2.12-2 1 (1 RC) neutral | neutral | neutral 3.2.12
biosig 3.9.0-1 3 neutral | neutral | neutral 3.9.1
blimps 3.9+ds-4 1 (1 RC)
bppphyview 0.6.1-5 1 0.6.1
bppsuite 2.4.1-7 1 pass | pass | pass 2.4.1
btllib 1.7.5+dfsg-2 1 pass | pass | pass 1.7.5
bustools 0.43.2+dfsg-1 2 pass | pass | pass 0.45.1
camp 0.8.4-4.1 2 0.8.4
cassiopee 1.0.9-4 1 pass | pass | pass 1.0.9
cde 0.1+git9-g551e54d-2 1 (1 RC) 0.No-Release
chromhmm 1.27+dfsg-1 1 pass | pass | pass 1.27
cif-tools 1.0.12-5 1 pass | pass | pass 1.0.12
ciftilib
1.6.0-2.1 (Git) action needed
1.6.0-2.1 2 pass | pass | pass 1.6.0
civetweb 1.16+dfsg-2 2 1.16
clonalorigin 1.0-8 1 pass | pass | pass 1.0
cmtk
3.3.1p2+dfsg-3 (Git) action needed
3.3.1p2+dfsg-3 2 3.4.0
consensuscore 1.1.1+dfsg-8 1 neutral | neutral | neutral 0.No-Release
crac 2.5.2+dfsg-6 1 pass | pass | pass
cufflinks 2.2.1+dfsg.1-10 2 (1 RC) 2.2.1
cutesv 2.1.1-1 1 neutral | neutral | neutral 2.1.3
cycle 0.3.3-2 5 0.3.3
datatables.js
1.11.5+dfsg-2 (Git) action needed
1.11.5+dfsg-2 1 2.3.4
dawg 1.2-4 2 neutral | neutral | neutral 1.2
dcm2niix 1.0.20241211-1 1 pass | pass | pass 1.0.20250506
dcmtk 3.6.9-5 6 pass | pass | pass 3.6.9
debian-med
3.9.1 (Git) action needed
3.9.0 1
delly 1.1.8-1 1 pass | pass | pass 1.5.0
diamond-aligner 2.1.11-2 1 pass | pass | pass 2.1.14
dicom3tools 1.00~20240118131615-1 6 pass | pass | pass 1.00.snapshot.20250817063845
dicomscope 3.6.0-27 1 3.6.0
discosnp 1:2.6.2-4 1 pass | pass | pass 2.6.2
disulfinder 1.2.11-12 1 (1 RC) pass | pass | pass 0.No-Site
dnaclust
3-7 (Git) action needed
3-7 1 pass | pass | pass 3
dssp
4.5.5-1 (Git) action needed
4.5.5-1 1 pass | pass | pass 4.5.6
ea-utils
1.1.2+dfsg-10 (Git) action needed
1.1.2+dfsg-9 1 pass | pass | pass 0.No-Track
edflib 1.27-1 1 pass | pass | pass 1.27
emboss
6.6.0+dfsg-17 (Git) action needed
6.6.0+dfsg-17 4 pass | pass | pass
emperor 1.0.4+ds-1 1 pass | pass | pass 1.0.4
enlighten 1.11.2-1 1 1.14.1
epcr 2.3.12-1-10 1 pass | pass | pass 0.No-Release
examl 3.0.22-6 2 pass | fail | pass 3.0.22
f2j
0.8.1+dfsg-5 (Git) action needed
0.8.1+dfsg-5 2 (1 RC) 0.8.1
fasta3 36.3.8i.14-Nov-2020-3 1 (1 RC) pass | pass | pass 36.3.8i_14-Nov-2020
fastlink
4.1P-fix100+dfsg-4 (Git) action needed
4.1P-fix100+dfsg-5 1 (1 RC) pass | pass | pass 0.No-Release
fastqtl 2.184+v7+dfsg-4 2 pass | pass | pass
fis-gtm 7.1-006-1 3 (1 RC) 7.1-008
flexbar
1:3.5.0-5 (Git) action needed
1:3.5.0-5 1 pass | pass | pass 3.5.0
freecontact
1.0.21-15 (Git) action needed
1.0.21-15 1 (1 RC) pass | pass | pass 0.No-Site
gatb-core 1.4.2+dfsg-13 2 pass | pass | pass 1.4.2
gatk-bwamem 1.0.4+dfsg2-3 1 (1 RC)
gbrowse 2.56+dfsg-12 2 pass | pass | pass 2.56
gdcm 3.0.24-5 8 (1 RC) pass | pass | pass 3.2.1
gdpc 2.2.5-16 2 pass | pass | pass 0.No-Release
genometester 4.0+git20200511.91cecb5+dfsg-1 1 pass | pass | pass 4.0+git20221122.71e6625
genomethreader 1.7.3+dfsg-10 1 pass | pass | pass 1.7.3
genometools 1.6.5+ds-2.2 2 (1 RC) pass | pass | pass 1.6.5
genomicsdb
1.5.5-1 (Git) action needed
1.5.5-1 1 fail | pass | pass 1.5.5
gentle 1.9.5~alpha2+dfsg1-2 2 1.9.5.alpha2
getdata 0.2-4 1 0.No-Track
gifticlib 1.0.9-6 1 pass | pass | pass 1.0.9
gmap 2024-11-20+ds-2 1 pass | pass | pass 2025-07-31
gwyddion 2.67-1 1 3.5
hhsuite 3.3.0+ds-8 1 pass | pass | pass 3.3.0
hilive
2.0a-4 (Git) action needed
2.0a-4 2 (1 RC) fail | pass | pass 2.0a
hinge
0.5.0-8 (Git) action needed
0.5.0-7 5 0.5.0
hisat2 2.2.1-5 2 pass | pass | pass 2.2.1
hmmer
3.4+dfsg-2 (Git) action needed
3.4+dfsg-2 1 pass | pass | pass 3.4
hopscotch-map 2.3.1-1 1 pass | pass | pass 2.3.1
hts-nim-tools 0.2.1-2 1 (1 RC) fail | pass | pass 0.2.1
iitii 0.0+git20191030.85209e0-3 2 fail 0.0+git20191030.85209e0
insighttoolkit5 5.4.3-5 1 5.4.3
intake
0.6.6-4 (Git) action needed
0.6.6-4 4 (1 RC) fail | pass | fail 2.0.8
invesalius 3.1.99998-7 1 neutral | neutral | neutral 3.1.99998
iqtree
2.3.4+dfsg-1 (Git) action needed
2.0.7+dfsg-1 2 (1 RC) pass | pass | pass 2.0.7
ismrmrd 1.8.0-2 2 pass | pass | pass 1.14.3
ivar 1.4.4+dfsg-1 1 pass | pass | pass 1.4.4
jellyfish
2.3.1-5 (Git) action needed
2.3.1-4 3 pass | pass | pass 2.3.1
jellyfish1 1.1.11-10 1 pass | pass | pass 1.1.11
jmodeltest 2.1.10+dfsg-12 2 (1 RC) 2.1.10
kallisto
0.51.1+dfsg-1 (Git) action needed
0.48.0+dfsg-4 3 pass | pass | pass 0.51.1
kineticstools 0.6.1+git20220223.1326a4d+dfsg-6 1 pass | pass | pass 0.6.1+git20220223.1326a4d
king
2.24+dfsg2-2 (Git) action needed
2.24+dfsg2-2 2 2.24
kmer 0~20150903+r2013-10 2 pass | pass | pass 0.No-Release
kmerresistance
2.2.0-5 (Git) action needed
2.2.0-4 1 2.2.0
lambda-align
1.0.3-6 (Git) action needed
1.0.3-6 1 pass | pass | pass 1.0.3
lambda-align2
2.0.1-4 (Git) action needed
2.0.1-3 1 pass | pass | pass 2.0.1
last-align
1642-1 (Git) action needed
1642-1 1 pass | pass | pass 1645
libai-fann-perl
0.10-5 (Git) action needed
0.10-5 1 pass | pass | pass 0.10
libatomicbitvector 0.0+git20200519.e295358-3 1 pass | pass | pass 0.0+git20200519.e295358
libbigwig 0.4.8+dfsg-1 1 (1 RC) pass | pass | pass 0.4.8
libbio-db-hts-perl 3.01-5 1 pass | pass | pass 3.01
libbpp-core 2.4.1-13 1 2.4.1
libbpp-phyl 2.4.1-11 1 2.4.1
libbpp-phyl-omics 2.4.1-7 1 2.4.1
libbpp-popgen 2.4.1-11 1 2.4.1
libbpp-qt 2.4.1-12 1 2.4.1
libbpp-raa 2.4.1-9 1 2.4.1
libbpp-seq 2.4.1-13 1 2.4.1
libbpp-seq-omics 2.4.1-12 1 2.4.1
libchado-perl
1.31-7 (Git) action needed
1.31-6 3 fail 1.31
libcifpp
9.0.1-1 (Git) action needed
7.0.9-1 1 pass | pass | pass 9.0.2
libdivsufsort 2.0.1-6 1 2.0.1
libedlib 1.2.7-6 1 pass | pass | pass 1.2.7
libgdf
0.1.3-12 (Git) action needed
0.1.3-12 1 pass | pass | pass 0.1.3
libgoby-java 3.3.1+dfsg2-11 1 pass | pass | pass 3.3.1
libgzstream 1.5+git20171107.9a20658-3 1 1.5+git20171107.9a20658
libics 1.6.8-1 1 1.6.8
liblemon 1.3.1+dfsg-6 1
libmaus2 2.0.813+ds-4 4 2.0.813
libmems 1.6.0+4725-11 1 0.No-Release
libmmmulti 0.1-3 1 0.1
libqes 0.2.8+ds-1 1 0.2.8
libquazip 0.9.1-5 2 0.No-Track
librcsb-core-wrapper 1.005-13 1 neutral | neutral | neutral 1.005
librg-blast-parser-perl 0.03-9 1 pass | pass | pass 0.No-Site
libsbml 5.20.4+dfsg-0.1 2 neutral | neutral | neutral 5.20.5
libshrinkwrap
1.2.0-3 (Git) action needed
1.2.0-2 1 1.2.0
libslow5lib 0.7.0+dfsg-3 4 pass | pass | pass 1.3.1
libsort-key-top-perl 0.08-4 1 pass | pass | pass 0.08
libstreamvbyte
0.5.1-1 (Git) action needed
0.4.1-4 1 2.0.0
libtecla
1.6.3-3 (Git) action needed
1.6.3-3.1 2 1.6.3
libzeep
6.1.1-1 (Git) action needed
5.1.8-1 1 pass | pass | pass 7.1.0
libzerg-perl 1.0.4-8 2 neutral | neutral | neutral 0.No-Site
libzstd
1.5.7+dfsg-1 (Git) action needed
1.5.7+dfsg-1.1 8 pass | pass | pass 1.5.7
ltrsift 1.0.2-10 3 1.0.2
lumpy-sv 0.3.1+dfsg-7 1 pass | pass | pass 0.3.1
maffilter 1.3.1+dfsg-6 1 pass | pass | pass 1.3.1
mapsembler2 2.2.4+dfsg1-4 1 pass | fail | pass 2.2.4
maude 3.4-1 1 3.5.1
maxflow 3.0.5-4 1 3.0.5
mcl 1:22-282+ds-4 1 pass | pass | pass 22-282
megadepth
1.2.0-4 (Git) action needed
1.2.0-4 1 pass | pass | pass 1.2.0
megahit 1.2.9-5 2 pass | pass | pass 1.2.9
melting 5.2.0-2 1 5.2.0
mencal 3.0-6 1 pass | pass | pass 3.0
metabat
2.17-1 (Git) action needed
2.15-4 1 pass | pass | pass 2.18
metaeuk 7-bba0d80+ds-1 1 pass | pass | pass 7-bba0d80
metaphlan2-data 2.6.0+ds-4 2 0.No-Track
mia
2.4.7-14 (Git) action needed
2.4.7-13 2 (1 RC) 2.4.7
microbegps 1.0.0-7 1 neutral | neutral | neutral 1.0.0
minc-tools 2.3.00+dfsg-13 1 pass | pass | pass 2-3-00
mindthegap 2.3.0-4 1 fail | pass | pass 2.3.0
minia 3.2.6-4 1 pass | pass | pass 3.2.6
minimap2 2.27+dfsg-1 1 pass | pass | pass 2.30
mlv-smile 1.47-10 1 pass | pass | pass 1.47
mmseqs2
15-6f452+ds-3 (Git) action needed
15-6f452+ds-2 1 pass | pass | pass 18-8cc5c
mosdepth 0.3.10+ds-1 1 (1 RC) fail | pass | pass 0.3.11
mptp 0.2.5-1 1 pass | pass | pass 0.2.5
mrtrix3
3.0.4-2 (Git) action needed
3.0.4-1 2 3.0.7
multiqc 1.21+dfsg-2 1 pass | pass | pass 1.31
murasaki 1.68.6-14 1 pass | pass | pass 1.68.6
muscle 1:5.1.0-1 1 pass | pass | pass 5.3
nanostat 1.4.0-4 1 fail | pass | pass 1.4.0
ncbi-blast+ 2.16.0+ds-7 5 pass | pass | pass 2.17.0
ncbi-igblast
1.20.0-2 (Git) action needed
1.20.0-2 3 (1 RC) pass | pass | pass 1.22.0
ncbi-seg 0.0.20000620-7 1 (1 RC) pass | pass | pass 0.No-Release
ncbi-tools6 6.1.20170106+dfsg2-6 1 pass | pass | pass 20170106
ngmlr 0.2.7+git20210816.a2a31fb+dfsg-2 1 pass | pass | pass 0.2.7+git20210816.a2a31fb
nibabel 5.3.2-2 2 pass | pass | pass 5.3.2
nifticlib 3.0.1-9.1 2 pass | pass | pass 3.0.1
nim-hts 0.3.25+ds-2 1 (1 RC) fail | pass | pass 0.3.25
nim-lapper 0.1.7-5 1 (1 RC) fail | pass | fail 0.1.8
nipype 1.9.2-4 1 pass | pass | pass 1.10.0
norsnet 1.0.17-7 1 pass | pass | pass 0.No-Site
norsp 1.0.6-7 1 pass | pass | pass 0.No-Site
ntcard 1.2.2+dfsg-9 1 pass | pass | pass
nthash 2.3.0+dfsg-4 1 pass | pass | pass 2.3.0
obitools
3.0.1~b26+dfsg-4 (Git) action needed
3.0.1~b26+dfsg-4 1 pass | pass | pass 3.0.1b26
opencfu 4.0.0+dfsg-2 1 4.0.0
openslide 3.4.1+dfsg-7 1 pass | pass | pass 4.0.0
openslide-python 1.4.1-1 1 neutral | neutral | neutral 1.4.2
orthanc 1.12.9+dfsg-2 1 pass | pass | pass 1.12.9
orthanc-postgresql 5.0+dfsg-5 1 9.0
parallel 20240222+ds-2 9 20250822
parsinsert 1.04-15 1 pass | pass | pass 1.04
paryfor 0.1-8 1 pass | pass | pass 0.1
pbcopper
2.3.0+dfsg-3 (Git) action needed
2.3.0+dfsg-2 1 (1 RC) 2.3.0
pbsuite 15.8.24+dfsg-8 1 (1 RC) fail | fail | fail 15.8.24
pftools 3.2.12-1 1 pass | pass | pass 3.2.12
phyml 3:3.3.20220408-4 1 pass | pass | pass 3.3.20250515
physamp 1.1.0-5 1 pass | pass | pass 1.1.0
pigx-rnaseq 0.1.1-1 1 (1 RC) 0.1.1
pixelmed 20250211+dfsg-2 4
pizzly
0.37.3+ds-9 (Git) action needed
0.37.3+ds-9 1 pass | pass | pass 0.37.3
plast 2.3.2+dfsg-11 2 pass | pass | pass 2.3.2
plink 1.07+dfsg-4 1 pass | pass | pass 1.07
populations 1.2.33+svn0120106+dfsg-7 1 1.2.33
pplacer
1.1~alpha19-9 (Git) action needed
1.1~alpha19-8 1 (1 RC) pass 1.1.alpha20
prime-phylo 1.0.11-13 3 (1 RC) pass | pass | pass 0.No-Site
primer3 2.6.1-5 1 (1 RC) pass | pass | pass 2.6.1
probabel
0.5.0+dfsg-7 (Git) action needed
0.5.0+dfsg-6 1 pass | pass | pass 0.5.0
profbval 1.0.22-8 1 pass | pass | pass 0.No-Site
profphd-utils 1.0.10-7 1 pass | pass | pass 0.No-Site
proteinortho 6.3.1+dfsg-1 1 pass | pass | pass
psortb 3.0.6+dfsg-4 2 pass | pass | pass
psychopy
2024.2.4+dfsg-1 (Git) action needed
2023.2.4+dfsg-4 7 (3 RC) pass | pass | fail 2025.2.1
pvrg-jpeg 1.2.1+dfsg1-9 1
pybel 0.15.5-1 1 neutral | neutral | neutral 0.15.5
pychopper 2.7.10-1 1 (1 RC) fail | pass | pass 2.7.10
pymia
0.1.9-3 (Git) action needed
0.1.9-2.1 2 0.1.9
pyrle 0.0.33-4.1 1 neutral | neutral | neutral
pysurfer 0.11.2-1 1 (1 RC) fail | pass | pass 0.11.2
python-anndata
0.12.0~rc4-1 (Git) action needed
0.12.0~rc1-1 1 (1 RC) fail | pass | fail 0.12.2
python-biom-format 2.1.16-1 1 pass | pass | pass 2.1.17
python-cogent 2024.5.7a1+dfsg-3 2 (1 RC) fail | pass | fail 2025.9.8a2
python-colormath 3.0.0-4 1 neutral | neutral | neutral 3.0.0
python-csb
1.2.5+dfsg-11 (Git) action needed
1.2.5+dfsg-10 1 pass | pass | pass 1.2.5
python-duckpy
3.2.0-4 (Git) action needed
3.2.0-3 3 (1 RC) fail | pass | fail 3.2.0
python-etelemetry 0.3.1-1 1 (1 RC) fail | pass | pass 0.3.1
python-hdmedians 0.14.2-6 1 pass | pass | pass 0.14.2
python-loompy 3.0.7+dfsg-4 1 pass | pass | pass 3.0.8
python-mne 1.9.0-2 2 neutral | neutral | neutral 1.10.1
python-ncls 0.0.63-hotfix+ds-1 1 pass | pass | pass 0.0.63-hotfix
python-pbcore 2.1.2+dfsg-12 2 pass | pass | pass 2.1.2
python-pynndescent 0.5.13-1 1 fail | pass | pass 0.5.13
python-schema-salad 8.9.20250723145140-1 2 neutral | neutral | pass 8.9.20250723145140
python-seqcluster
1.2.9+ds-5 (Git) action needed
1.2.9+ds-5 1
python-streamz 0.6.4-2 2 pass | pass | pass 0.6.4
python-wordcloud
1.9.3+dfsg-2 (Git) action needed
1.9.3+dfsg-2 1 pass | pass | pass 1.9.4
q2-alignment
2024.5.0-1 (Git) action needed
2024.5.0-1 1 (1 RC) fail | fail | fail 2025.7.0
q2-cutadapt
2024.5.0-2 (Git) action needed
2024.5.0-1 1 fail | fail | fail 2025.7.0
q2-demux
2024.5.0+dfsg-1 (Git) action needed
2024.5.0+dfsg-1 1 (1 RC) fail | fail | fail 2025.7.0
q2-feature-classifier
2024.5.0-1 (Git) action needed
2024.2.0-1 2 (1 RC) fail | pass | fail 2025.7.0
q2-phylogeny
2024.5.0-1 (Git) action needed
2024.5.0-1 1 (1 RC) fail | fail | fail 2025.7.0
q2-quality-control 2024.5.0-1 1 fail | fail | fail 2025.7.0
q2-types
2024.5.0-1 (Git) action needed
2024.5.0-1 3 (1 RC) fail | fail | fail 2025.7.0
q2cli 2024.5.0-2 1 (1 RC) fail | fail | neutral 2025.7.0
q2templates 2024.5.0+ds-3 1 pass | pass | pass 2025.7.0
qcat 1.1.0-7 1 pass | pass | pass 1.1.0
qcumber
2.3.0-3 (Git) action needed
2.3.0-2 6
qiime
2024.10.1-1 (Git) action needed
2024.5.0-1 2 fail | fail | fail 2025.7.0
qrisk2 0.1.20150729-7 1 pass | pass | pass 0.No-Track
r-bioc-genomeinfodb 1.42.3+dfsg-1 1 (1 RC) fail | fail | fail 1.44.2
r-cran-assertthat 0.2.1-2 1 pass | pass | pass 0.2.1
r-cran-bbmle 1.0.25.1-1 1 pass | pass | pass 1.0.25.1
r-cran-curl 7.0.0+dfsg-1 1 pass | pass | pass 7.0.0
r-cran-diagnosismed 0.2.3-7 1 pass | pass | pass 0.2.3
r-cran-dplyr 1.1.4-4 1 pass | pass | pass 1.1.4
r-cran-epicalc 2.15.1.0-5 1 pass | pass | pass 2.15.1.0
r-cran-genabel.data 1.0.0-4 1 fail | pass | pass
r-cran-igraph 2.1.4-1 1 pass | pass | pass 2.1.4
r-cran-medadherence 1.03-6 1 pass | pass | pass 1.03
r-cran-openssl 2.3.2+dfsg-1 1 pass | pass | pass 2.3.3
r-cran-pvclust 2.2-0-2 1 pass | pass | pass 2.2-0
r-cran-raster 3.6-31-1 1 fail | fail | pass 3.6-32
r-cran-rcurl 1.98-1.16+dfsg-1 1 pass | pass | pass 1.98-1.17
r-cran-rglwidget 0.2.1-4 1 pass | pass | pass
r-cran-rmarkdown 2.29+dfsg-1 1 pass | pass | fail 2.29
r-cran-seroincidence 2.0.0-3 2 pass | pass | pass 2.0.0
r-cran-shiny 1.10.0+dfsg-2 1 pass | pass | pass 1.11.1
racon 1.5.0-3 1 (1 RC) pass | pass | pass 1.5.0
rambo-k
1.21+dfsg-6 (Git) action needed
1.21+dfsg-5 1
rapmap 0.15.0+dfsg-4 3 (1 RC) pass | pass | pass 0.15.0
raster3d 3.0-7-2 2 (1 RC) pass | pass | pass 3.0-8
raxml 8.2.13+dfsg-2 1 pass | pass | pass 8.2.13
rdp-classifier 2.10.2-7 2 (1 RC) 2.10.2
readseq 1-15 1 (1 RC) pass | pass | pass 0.No-Release
relion 3.1.3-4 2 (1 RC) neutral | neutral | neutral 5.0.0
relion-cuda
(Git) action needed
3.1.3-2 2 (2 RC) fail | neutral | fail 5.0.0
resfinder-db 0.0+git20220524.fa32d9a-1 1 0.0+git20250909.c0aa05c
roguenarok 1.0.1-3 1 (1 RC) pass | pass | pass 1.0.1
routine-update
0.2.5 (Git) action needed
0.2.4 4
rtfilter
1.3-1 (Git) action needed
1.3-1 1 (1 RC) 1.3
saint 2.5.0+dfsg-4 1 2.5.0
salmon 1.10.2+ds1-1 3 (1 RC) pass | pass | pass 1.10.3
sambamba
1.0.1+dfsg-3 (Git) action needed
1.0.1+dfsg-2 2 pass | pass | pass 1.0.1
savvy 2.1.0-3 1 2.1.0
scrappie
1.4.2-8 (Git) action needed
1.4.2-8 1 pass | pass | pass 1.4.2
seirsplus
1.1.0-1 (Git) action needed
1.0.9-2 1 pass | pass | pass 1.0.9
seq-gen
1.3.4-3 (Git) action needed
1.3.4-2 1 (1 RC) 1.3.5
seqan-raptor 3.0.1+ds-10 1 pass | pass | pass 3.0.1
seqan2
2.4.0+dfsg-16 (Git) action needed
2.4.0+dfsg-16 2 pass | pass | pass 2.5.1
seqan3 3.4.0+ds-1 1 pass | pass | pass 3.4.0
seqprep 1.3.2-9 1 pass | pass | pass 1.3.2
seqtools
4.44.1+dfsg-8 (Git) action needed
4.44.1+dfsg-7.1 2 pass | pass | pass
setcover 0.0~git20161128.b1de791-2 1 0.0~git20161128.b1de791
shasta
0.13.0-1 (Git) action needed
0.12.0-1 1 pass | pass | pass 0.14.0
sibelia
3.0.7+dfsg-3 (Git) action needed
3.0.7+dfsg-3 1 pass | pass | pass 3.0.7
sift
6.2.1-1 (Git) action needed
6.2.1-1 4 (1 RC)
sight 25.0.0-1 4 (2 RC) 25.1.0
sim4 0.0.20121010-8 1 (1 RC) pass | pass | pass 2012-10-10
simka 1.5.3-8 1 pass | pass | pass 1.5.3
simrisc 16.02.00-1 1 pass | pass | pass
skesa 2.4.0-6 1 2.4.0
snakemake
8.2.3-1 (Git) action needed
7.32.4-7 2 pass | pass | pass 9.11.4
snap-aligner 2.0.5+dfsg-1 1 pass | pass | pass 2.0.5
soapaligner 2.20-5 1 (1 RC) 0.No-Site
soapdenovo 1.05-6 1 (1 RC) pass | pass | pass 0.No-Release
soapdenovo2 242+dfsg-4 2 (1 RC) pass | pass | pass 242
sorted-nearest 0.0.39+dfsg-3 1 pass | pass | pass 0.0.39
sortmerna 4.3.7-2 3 (1 RC) neutral | neutral | neutral 4.3.7
spades 4.0.0+really3.15.5+dfsg-2 3 pass | pass | pass 4.2.0
spaln 3.0.2+dfsg-2 1 pass | pass | pass 3.0.7
spoa 4.1.4-2 1 (1 RC) pass | pass | pass 4.1.5
staden
2.0.0+b11-7 (Git) action needed
2.0.0+b11-5 1 (1 RC) 2.0.0b11
surankco 0.0.r5+dfsg-4 1 r5
sweed 3.2.1+dfsg-6 1 (1 RC) pass | pass | pass 3.2.1
t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 1 pass | pass | pass
terraphast 0.0+git20200413.8af2e4c+dfsg-3 1 pass | pass | pass 0.0+git20250513.85ab617
theseus 3.3.0-14 1 pass | pass | pass
thesias 3.1.1-3 1 (1 RC) 3.1.1
toil
8.2.0-1 (Git) action needed
8.0.0-5 1 pass | pass | pass 9.1.0
tombo 1.5.1-7 1 pass | pass | pass 1.5.1
transrate-tools 1.0.0-5 1 pass | pass | pass 1.0.0
tree-puzzle 5.3~rc16+dfsg-12 2 pass | pass | pass 5.2
treeviewx 0.5.1+git20100823.7e4d0e9-4 1 0.5.1+git20100823.7e4d0e9
trinculo
0.96+dfsg-4 (Git) action needed
0.96+dfsg-4 1 pass | pass | pass 0.96
trinityrnaseq 2.15.2+dfsg-1 2 pass | pass | pass 2.15.2
trnascan-se 2.0.12+ds-1 1 (1 RC) pass | pass | pass
twopaco 1.0.0+dfsg-1 1 pass | pass | pass 1.1.0
uc-echo 1.12-19 1 pass | pass | pass 1_12
ugene
52.1+dfsg-2 (Git) action needed
52.1+dfsg-1 1 52.1
umap-learn 0.5.9.post2+dfsg-1 4 (1 RC) fail | pass | fail 0.5.9.post2
umis
1.0.9-2 (Git) action needed
1.0.9-2 1 (1 RC) fail | pass | pass 1.0.9
unifrac-tools 1.4-3 1 neutral | neutral | neutral 1.5.1
velvet 1.2.10+dfsg1-9 1 pass | pass | pass 1.2.10
vg
1.59.0+ds-0.1 (Git) action needed
1.59.0+ds-0.1 5 (1 RC) pass | pass | fail 1.68.0
vmatch 2.3.1+dfsg-9 1 pass | pass | pass 2.3.1
volpack 1.0b3-10 1 (1 RC) pass | pass | pass 1.0b3
wtdbg2 2.5-10 1 (1 RC) pass | pass | pass 2.5
xdffileio
1.0-1 (Git) action needed
0.3-4 1 0.No-Release
xenium 0.0.2+ds-8 1 0.0.2
xmedcon 0.25.1-gtk3+dfsg-1 2 0.25.3-gtk3
yaha 0.1.83-3 1 pass | pass | pass 0.1.83