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Debian Med

Packages with bugs (271) [hide table]
Package VCS Archive Bugs Tests Upstream
abyss
2.3.10-2 (Git) action needed
2.3.10-1 1 pass | pass | pass 2.3.10
acedb
4.9.39+dfsg.02-10 (Git) action needed
4.9.39+dfsg.02-9 1 (1 RC) 4.9.39
aegean 0.16.0+dfsg-4 1 pass | pass | pass 0.16.0
allelecount 4.3.0-3 1 pass | pass | pass 4.3.0
altree 1.3.2-2 3 pass | pass | pass
amide 1.0.6-5 2 neutral | neutral 1.0.6
ampliconnoise 1.29-15 1 pass | pass | pass 1.29
ants 2.5.4+dfsg-1 8 2.6.0
arb
6.0.6-8 (Git) action needed
6.0.6-8 4 7.0
augur
26.0.0-1 (Git) action needed
24.4.0-1 1 pass | pass | pass 31.0.0
ball 1.5.0+git20180813.37fc53c-11 2 (1 RC) 1.5.0+git20220524.d85d2dd
bambamc 0.0.50-6 1 0.0.50
bamtools 2.5.2+dfsg-6 1 pass | pass | pass 2.5.3
bart-cuda
(Git) action needed
0.8.00-2 2 (2 RC) fail | pass | fail 0.9.00
bbhash
1.0.0-6 (Git) action needed
1.0.0-6 2 pass | pass | pass 1.0.0
bcbio 1.2.9-3 1 (1 RC) neutral | neutral | neutral 1.2.9
beads 1.1.22-1 2 pass | pass | pass
beagle 241217-3 1 pass | pass | pass 250227
beast-mcmc 1.10.4+dfsg-6 2 1.10.4
beast2-mcmc 2.7.6+dfsg-1 1 pass | pass | pass 2.7.7
bedtools 2.31.1+dfsg-2 2 pass | pass | pass 2.31.1
bifrost 1.3.1-1 1 pass | pass 1.3.5
bitseq
0.7.5+dfsg-7 (Git) action needed
0.7.5+dfsg-6 1 0.7.5
btllib 1.7.5+dfsg-2 1 pass | pass 1.7.5
bustools 0.43.2+dfsg-1 1 pass | pass | pass 0.45.0
camp 0.8.4-4.1 1 0.8.4
cde 0.1+git9-g551e54d-2 1 0.No-Release
chromhmm 1.26+dfsg-3 1 pass | pass | pass 1.26
coils 2002-9 1 pass | pass | pass 0.No-Release
consensuscore 1.1.1+dfsg-8 1 neutral | neutral | neutral 0.No-Release
crac 2.5.2+dfsg-6 1 pass | pass | pass
ctn 3.2.0~dfsg-8 1 3.2.0
cutesv 2.1.1-1 1 neutral | neutral 2.1.2
cycle 0.3.3-2 5 0.3.3
dawg 1.2-4 1 neutral | neutral | neutral 1.2
dcmtk 3.6.9-5 5 pass | pass | pass 3.6.9
dicom3tools 1.00~20240118131615-1 6 pass | pass | pass 1.00~20250128115421
dwgsim 0.1.14-3 1 pass | pass | pass 0.1.14
ea-utils
1.1.2+dfsg-10 (Git) action needed
1.1.2+dfsg-9 1 pass | pass | pass 0.No-Track
emboss 6.6.0+dfsg-15 5 pass | pass | pass 6.6.0
emperor 1.0.4+ds-1 1 pass | pass | pass 1.0.4
enlighten 1.11.2-1 1 1.14.1
epcr 2.3.12-1-10 1 pass | pass | pass 0.No-Release
examl 3.0.22-6 2 pass | pass | pass 3.0.22
f2j 0.8.1+dfsg-5 2 0.8.1
fasta3 36.3.8i.14-Nov-2020-3 1 fail | pass | pass 36.3.8i.14-Nov-2020
fastlink
4.1P-fix100+dfsg-4 (Git) action needed
4.1P-fix100+dfsg-5 1 pass | pass | pass 0.No-Release
fis-gtm 7.1-006-1 2 7.1-007
freecontact
1.0.21-15 (Git) action needed
1.0.21-15 1 pass | pass | pass 0.No-Site
gatb-core 1.4.2+dfsg-13 2 pass | pass | pass 1.4.2
gatk-bwamem 1.0.4+dfsg2-3 1 1.0.4
gbrowse 2.56+dfsg-12 2 pass | pass | pass 2.56
gdcm 3.0.24-5 6 pass | pass | pass 3.0.25
gdpc 2.2.5-16 2 pass | pass | pass 0.No-Release
genomethreader 1.7.3+dfsg-10 1 pass | pass | pass 1.7.3
genometools 1.6.5+ds-2.2 1 pass | pass | pass 1.6.5
genomicsdb 1.5.4-5 2 (1 RC) pass | pass | pass 1.5.5
gentle 1.9.5~alpha2+dfsg1-2 1 1.9.5~alpha2
getdata 0.2-4 1 0.No-Track
gwyddion 2.67-1 1 3.3
hilive
2.0a-4 (Git) action needed
2.0a-4 1 (1 RC) pass | pass | pass 2.0a
hinge
0.5.0-8 (Git) action needed
0.5.0-7 4 0.5.0
hisat2 2.2.1-5 2 pass | pass | pass 2.2.1
hmmer 3.4+dfsg-2 1 pass | pass | pass 3.4
iitii 0.0+git20191030.85209e0-3 1 fail 0.0+git20191030.85209e0
insighttoolkit5 5.4.3-5 1 5.4.3
intake
0.6.6-4 (Git) action needed
0.6.6-3 5 (2 RC) pass | pass | fail 2.0.8
invesalius 3.1.99998-7 1 neutral | neutral | neutral 3.1.99998
iqtree
2.3.4+dfsg-1 (Git) action needed
2.0.7+dfsg-1 1 pass | pass | pass 2.0.7
ismrmrd 1.8.0-2 1 pass | pass | pass 1.14.2
ivar 1.4.4+dfsg-1 1 pass | pass | pass 1.4.4
jellyfish
2.3.1-5 (Git) action needed
2.3.1-4 3 pass | pass | pass 2.3.1
jellyfish1 1.1.11-10 1 pass | pass | pass 1.1.11
jmodeltest 2.1.10+dfsg-12 2 (1 RC) 2.1.10
kallisto
0.51.1+dfsg-1 (Git) action needed
0.48.0+dfsg-4 2 pass | pass | pass 0.51.1
kineticstools 0.6.1+git20220223.1326a4d+dfsg-6 1 pass | pass | pass 0.6.1+git20220223.1326a4d
king 2.24+dfsg2-2 1 2.24
kmer 0~20150903+r2013-9 2 pass | pass | pass 0.No-Release
kmerresistance
2.2.0-5 (Git) action needed
2.2.0-4 1 2.2.0
last-align 1609-1 1 pass | pass | pass 1639
lastz 1.04.22-2 1 pass | pass | pass 1.04.52
libace-perl 1.92-12 1 neutral | neutral | neutral 1.92
libai-fann-perl
0.10-5 (Git) action needed
0.10-5 1 pass | pass | pass 0.10
libatomic-queue 1.6.5-2 1 pass | fail | fail 1.6.9
libbio-db-hts-perl 3.01-5 1 pass | pass | pass 3.01
libchado-perl
1.31-7 (Git) action needed
1.31-6 3 fail 1.31
libcifpp
7.0.9-1 (Git) action needed
7.0.9-1 1 pass | pass | pass 8.0.1
libfreecontact-perl
0.08-10 (Git) action needed
0.08-10 1 pass | pass | pass 0.No-Site
libgzstream 1.5+git20171107.9a20658-3 1 1.5+git20171107.9a20658
libics 1.6.8-1 1 1.6.8
libmaus2 2.0.813+ds-4 4 2.0.813
libminc
2.4.06-2.1 (Git) action needed
2.4.06-2.1 1 fail 2.4.06
libquazip 0.9.1-5 1 0.No-Track
librcsb-core-wrapper 1.005-13 1 neutral | neutral | neutral 1.005
librg-blast-parser-perl 0.03-9 1 pass | pass | pass 0.No-Site
libsbml 5.20.4+dfsg-0.1 1 neutral | neutral | neutral 5.20.5
libslow5lib 0.7.0+dfsg-3 4 pass | pass | pass 1.3.0
libsort-key-top-perl 0.08-4 1 pass | pass | pass 0.08
libtecla
1.6.3-3 (Git) action needed
1.6.3-3.1 2 1.6.3
libtfbs-perl 0.7.1+ds-4 2 pass | pass | pass 0.7.1
libvistaio 1.2.19-3 1 1.2.19
libzeep
6.1.1-1 (Git) action needed
5.1.8-1 1 pass | pass | pass 7.0.2
libzerg-perl 1.0.4-8 2 neutral | neutral | neutral 0.No-Site
libzstd 1.5.7+dfsg-1 8 pass | pass | pass 1.5.7
ltrsift 1.0.2-10 3 1.0.2
lumpy-sv 0.3.1+dfsg-7 1 pass | pass | pass 0.3.1
mafft 7.505-1 1 pass | pass | pass 7.525
maude 3.4-1 1 3.5
mcl 1:22-282+ds-4 1 pass | pass | pass 22-282
megahit 1.2.9-5 1 pass | pass | pass 1.2.9
melting 5.2.0-2 1 5.2.0
mencal 3.0-6 1 pass | pass | pass 3.0
metaphlan
4.0.4+ds-1 (Git) action needed
4.0.4-1 1 4.1.1
metaphlan2-data 2.6.0+ds-4 2 0.No-Track
mia
2.4.7-14 (Git) action needed
2.4.7-13 1 (1 RC) 2.4.7
mialmpick 0.2.15-2 2 (1 RC) 0.2.15
microbegps 1.0.0-7 1 neutral | neutral 1.0.0
minimap2 2.27+dfsg-1 1 pass | pass | pass 2.29
mlv-smile 1.47-10 1 pass | pass | pass 1.47
mptp 0.2.5-1 1 pass | pass | pass 0.2.5
multiqc 1.21+dfsg-2 1 pass | pass | pass 1.28
muscle 1:5.1.0-1 1 pass | pass | pass 5.3
mypy 1.15.0-5 1 pass | pass | pass 1.15.0
nanopolish 0.14.0-1 1 pass | pass | pass 0.14.0
nanostat 1.4.0-4 1 pass | pass | pass 1.4.0
ncbi-blast+ 2.16.0+ds-7 5 pass | pass | pass 2.16.0
ncbi-igblast
1.20.0-2 (Git) action needed
1.20.0-2 2 pass | pass 1.22.0
ncbi-seg 0.0.20000620-7 1 pass | pass | pass 0.No-Release
ncbi-tools6 6.1.20170106+dfsg2-5 2 fail | pass | pass 6.1.20170106
nibabel 5.3.2-2 1 pass | pass | pass 5.3.2
nifticlib 3.0.1-9.1 1 pass | pass | pass 3.0.1
nipype 1.9.2-2 1 pass | pass | pass 1.10.0
norsnet 1.0.17-7 1 pass | pass | pass 0.No-Site
ntcard 1.2.2+dfsg-9 1 pass | pass | pass 1.2.2
nthash 2.3.0+dfsg-4 1 pass | fail | pass 2.3.0
obitools
3.0.1~b26+dfsg-4 (Git) action needed
3.0.1~b26+dfsg-4 1 pass | pass 3.0.1~b26
opencfu 4.0.0+dfsg-2 1 4.0.0
openslide 3.4.1+dfsg-7 1 pass | pass | pass 4.0.0
openslide-python 1.4.1-1 1 neutral | neutral | neutral 1.4.2
orthanc 1.12.7+dfsg-4 1 pass | pass 1.12.7
orthanc-postgresql
5.0+dfsg-3 (Git) action needed
5.0+dfsg-3 1 7.2
parallel 20240222+ds-2 8 20250422
parsinsert 1.04-15 1 pass | pass | pass 1.04
pbcopper
2.3.0+dfsg-3 (Git) action needed
2.3.0+dfsg-2 1 2.3.0
pbsuite 15.8.24+dfsg-8 1 (1 RC) pass | fail | fail 15.8.24
pftools 3.2.12-1 1 pass | pass | pass 3.2.12
phast 1.7+dfsg-2 1 pass | pass | pass 1.8
pixelmed 20250211+dfsg-2 4
plast 2.3.2+dfsg-10 2 pass | pass | pass 2.3.2
pplacer
1.1~alpha19-9 (Git) action needed
1.1~alpha19-8 1 (1 RC) pass 1.1~alpha19
prime-phylo 1.0.11-13 2 pass | pass | pass 0.No-Site
primer3 2.6.1-5 1 pass | pass | pass 2.6.1
probabel
0.5.0+dfsg-7 (Git) action needed
0.5.0+dfsg-6 1 pass | pass | pass 0.5.0
proteinortho 6.3.1+dfsg-1 1 pass | pass | pass
psortb 3.0.6+dfsg-4 2 pass | pass | pass
psychopy
2024.2.4+dfsg-1 (Git) action needed
2023.2.4+dfsg-4 7 (3 RC) pass | pass | fail 2025.1.1
pychopper 2.7.10-1 1 (1 RC) pass | pass | pass 2.7.10
pymia
0.1.9-3 (Git) action needed
0.1.9-2.1 2 0.1.9
pyranges 0.0.111+ds-9 1 neutral | neutral | neutral 0.0.111
pyrle 0.0.33-4.1 1 neutral | neutral | neutral
pysurfer 0.11.2-1 1 (1 RC) pass | pass | fail 0.11.2
python-anndata
0.12.0~rc1-1 (Git) action needed
0.10.6-1 2 (1 RC) pass | pass | fail 0.11.4
python-biom-format 2.1.16-1 1 pass | pass | pass 2.1.16
python-biopython 1.85+dfsg-4 1 pass | pass | pass 1.85
python-cogent 2024.5.7a1+dfsg-3 2 (1 RC) pass | pass | fail 2025.5.8a5
python-colormath 3.0.0-4 1 neutral | neutral | neutral 3.0.0
python-csb
1.2.5+dfsg-11 (Git) action needed
1.2.5+dfsg-10 1 pass | pass | pass 1.2.5
python-duckpy
3.2.0-4 (Git) action needed
3.2.0-3 2 (1 RC) fail | pass | fail 3.2.0
python-hdmedians 0.14.2-6 1 pass | pass | pass 0.14.2
python-loompy 3.0.7+dfsg-4 1 pass | pass | pass 3.0.8
python-mne 1.9.0-2 2 neutral | neutral | neutral 1.9.0
python-ncls 0.0.63-hotfix+ds-1 1 pass | pass | pass 0.0.63-hotfix
python-pbcore 2.1.2+dfsg-11 1 pass | pass | pass 2.1.2
python-pynndescent 0.5.11-1 4 (1 RC) pass | pass | fail 0.5.13
python-schema-salad 8.9.20250408123006-1 2 pass | neutral | neutral 8.9.20250408123006
python-seqcluster
1.2.9+ds-5 (Git) action needed
1.2.9+ds-5 1 1.2.9
python-streamz 0.6.4-2 2 pass | pass | pass 0.6.4
python-wordcloud
1.9.3+dfsg-2 (Git) action needed
1.9.3+dfsg-2 1 pass | pass | pass 1.9.4
q2-alignment
2024.5.0-1 (Git) action needed
2024.5.0-1 1 (1 RC) pass | fail | fail 2025.4.0
q2-cutadapt
2024.5.0-2 (Git) action needed
2024.5.0-1 1 pass | fail | fail 2025.4.0
q2-demux
2024.5.0+dfsg-1 (Git) action needed
2024.5.0+dfsg-1 1 (1 RC) pass | fail | fail 2025.4.0
q2-feature-classifier
2024.5.0-1 (Git) action needed
2024.2.0-1 1 (1 RC) pass | pass | fail 2025.4.0
q2-phylogeny
2024.5.0-1 (Git) action needed
2024.5.0-1 1 (1 RC) fail | fail | fail 2025.4.0
q2-quality-control 2024.5.0-1 1 pass | fail | fail 2025.4.0
q2-types
2024.5.0-1 (Git) action needed
2024.5.0-1 3 (1 RC) pass | fail | fail 2025.4.0
q2cli 2024.5.0-2 1 (1 RC) pass | fail | neutral 2025.4.0
q2templates 2024.5.0+ds-3 1 pass | pass | pass 2025.4.0
qcat 1.1.0-7 1 pass | pass | pass 1.1.0
qcumber
2.3.0-3 (Git) action needed
2.3.0-2 6
qiime
2024.10.1-1 (Git) action needed
2024.5.0-1 2 fail | fail | fail 2025.4.0
qrisk2 0.1.20150729-7 1 pass | pass | pass 0.No-Track
r-cran-assertthat 0.2.1-2 1 pass | pass | pass 0.2.1
r-cran-bbmle 1.0.25.1-1 1 pass | pass | pass 1.0.25.1
r-cran-bold 1.3.0-1 1 pass | fail | fail
r-cran-curl
6.2.1+dfsg-2 (Git) action needed
6.2.1+dfsg-1 1 pass | pass | pass 6.2.2
r-cran-diagnosismed 0.2.3-7 1 pass | pass | pass 0.2.3
r-cran-dplyr 1.1.4-4 1 fail | pass | pass 1.1.4
r-cran-epicalc 2.15.1.0-5 1 pass | pass | pass 2.15.1.0
r-cran-genabel 1.8-0-6 1 (1 RC) pass | pass | pass 1.8-0
r-cran-genabel.data 1.0.0-4 1 pass | pass | pass
r-cran-igraph 2.1.4-1 1 pass | pass | pass 2.1.4
r-cran-medadherence 1.03-6 1 pass | pass | pass 1.03
r-cran-mockr 0.2.1-1 1 (1 RC) pass | fail | pass 0.2.2
r-cran-openssl 2.3.2+dfsg-1 1 pass | pass | pass 2.3.2
r-cran-pvclust 2.2-0-2 1 pass | pass | pass 2.2-0
r-cran-rcurl 1.98-1.16+dfsg-1 1 pass | pass | pass 1.98-1.17
r-cran-rglwidget 0.2.1-4 1 pass | pass | pass
r-cran-rmarkdown 2.29+dfsg-1 1 pass | pass | pass 2.29
r-cran-seroincidence 2.0.0-3 2 pass | pass | pass 2.0.0
r-cran-shiny 1.10.0+dfsg-2 1 pass | pass | pass 1.10.0
racon 1.5.0-3 1 pass | pass | pass 1.5.0
rambo-k
1.21+dfsg-6 (Git) action needed
1.21+dfsg-5 1
rapmap 0.15.0+dfsg-4 3 pass | pass | pass 0.15.0
raster3d 3.0-7-2 2 pass | pass | pass 3.0-8
raxml 8.2.13+dfsg-2 1 pass | pass | pass 8.2.13
rdp-classifier 2.10.2-7 1 (1 RC) 2.10.2
readseq 1-15 1 pass | pass | pass 0.No-Release
relion 3.1.3-4 1 neutral | neutral | neutral 5.0.0
relion-cuda
(Git) action needed
3.1.3-2 2 (2 RC) neutral | neutral | fail 5.0.0
resfinder-db 0.0+git20220524.fa32d9a-1 1 0.0+git20250515.cf9bbc7
roguenarok 1.0.1-3 1 pass | pass | pass 1.0.1
routine-update
0.2.4 (Git) action needed
0.2.3 6
saint 2.5.0+dfsg-4 1 2.5.0
salmon 1.10.2+ds1-1 3 pass | pass | pass 1.10.3
sambamba
1.0.1+dfsg-3 (Git) action needed
1.0.1+dfsg-2 2 pass | pass | pass 1.0.1
seirsplus
1.1.0-1 (Git) action needed
1.0.9-2 1 pass | pass | pass 1.0.9
seqan2
2.4.0+dfsg-16 (Git) action needed
2.4.0+dfsg-16 2 pass | pass | pass 2.5.0
seqan3 3.4.0~rc.3+ds-4 1 pass | pass | pass 3.4.0~rc.3
seqprep 1.3.2-9 1 pass | pass | pass 1.3.2
seqtools
4.44.1+dfsg-8 (Git) action needed
4.44.1+dfsg-7.1 2 pass | pass | pass 4.44.1
sift
6.2.1-1 (Git) action needed
6.2.1-1 3 6.2.1
sight 25.0.0-1 2 25.0.0
sim4 0.0.20121010-8 1 pass | pass | pass 0.0.20121010
simrisc 16.02.00-1 1 pass | pass | pass
snakemake
8.2.3-1 (Git) action needed
7.32.4-7 2 pass | pass | pass 9.4.0
snap-aligner
2.0.3+dfsg-3 (Git) action needed
2.0.3+dfsg-2 1 pass | pass | pass 2.0.5
soapaligner 2.20-5 1 0.No-Site
soapdenovo 1.05-6 1 pass | pass | pass 0.No-Release
soapdenovo2 242+dfsg-4 2 pass | pass | pass 242
sorted-nearest 0.0.39+dfsg-3 1 pass | pass | pass 0.0.39
sortmerna 4.3.7-2 2 pass | neutral | neutral 4.3.7
spades 4.0.0+really3.15.5+dfsg-1 3 pass | pass | pass 4.2.0
spoa 4.1.4-2 1 pass | pass | pass 4.1.4
staden
2.0.0+b11-6 (Git) action needed
2.0.0+b11-5 1 2.0.0b11
surankco 0.0.r5+dfsg-4 1 0.0.r5
sweed 3.2.1+dfsg-6 1 pass | pass | pass 3.2.1
t-coffee 13.45.0.4846264+really13.41.0.28bdc39+dfsg-1 1 pass | pass | pass
tao-json 1.0.0~beta14-1 1 (1 RC) 1.0.0~beta14
theseus 3.3.0-14 1 pass | pass | pass
thesias 3.1.1-3 1 3.1.1
tnseq-transit 3.3.12-1 1 pass | pass | pass 3.3.19
tracetuner 3.0.6~beta+dfsg-3 1 3.0.6~beta
treeviewx 0.5.1+git20100823.7e4d0e9-4 1 0.5.1+git20100823.7e4d0e9
trinculo
0.96+dfsg-4 (Git) action needed
0.96+dfsg-4 1 pass | pass | pass 0.96
trinityrnaseq 2.15.2+dfsg-1 1 pass | pass | pass 2.15.2
twopaco 1.0.0+dfsg-1 1 pass | pass | pass 1.1.0
uc-echo 1.12-19 1 pass | pass | pass 1.12
ugene
51.0+dfsg-4 (Git) action needed
51.0+dfsg-3 1 52.1
umap-learn 0.5.4+dfsg-1 3 (1 RC) pass | pass | fail 0.5.4
umis
1.0.9-2 (Git) action needed
1.0.9-2 1 (1 RC) pass | pass | pass 1.0.9
unifrac-tools 1.4-3 1 neutral | neutral | neutral 1.5
velvet 1.2.10+dfsg1-9 1 pass | pass | pass 1.2.10
vg
1.59.0+ds-0.1 (Git) action needed
1.59.0+ds-0.1 4 (1 RC) pass | pass | fail 1.65.0
vienna-rna
2.7.0+dfsg-1 (Git) action needed
2.6.4+dfsg-1 1 2.7.0
vmatch 2.3.1+dfsg-9 1 pass | pass | pass 2.3.1
volpack 1.0b3-10 1 pass | pass | pass 1.0b3
wise 2.4.1-27 1 pass | pass | pass
wtdbg2 2.5-10 1 pass | pass | pass 2.5
xdffileio
1.0-1 (Git) action needed
0.3-4 1 0.No-Release
xmedcon 0.25.1-gtk3+dfsg-1 2 0.25.2-gtk3
yaha 0.1.83-3 1 pass | pass | pass 0.1.83